Bikash R. Sahoo

发表

Optical Nanoscopy Tools for Biologists:Advancements of Fluorophores and Optics for High Resolution and Live Imaging

Dhermendra K. Tiwari, Manisha Tiwari, Bikash R. Sahoo, 2017 .

LeishMicrosatDB: open source database of repeat sequences detected in six fully sequenced Leishmania genomes

Ganesh Chandra Sahoo, Pradeep Das, Manas Ranjan Dikhit, 2014, Database J. Biol. Databases Curation.

Discovery of a non‐nucleoside RNA polymerase inhibitor for blocking Zika virus replication through in silico screening

Nicholas Y. Palermo, Bikash R. Sahoo, Aryamav Pattnaik, 2017, Antiviral research.

Exploring novel KDR inhibitors based on pharmaco-informatics methodology

Bikash R. Sahoo, R. Kar, G. Sahoo, 2013, SAR and QSAR in environmental research.

Computational Elucidation of Structural Basis for Ligand Binding with Leishmania donovani Adenosine Kinase

Pradeep Das, Md. Yousuf Ansari, Bikash R. Sahoo, 2013, BioMed research international.

Molecular recognition of avirulence protein (avrxa5) by eukaryotic transcription factor xa5 of rice (Oryza sativa L.): insights from molecular dynamics simulations.

Bikash R. Sahoo, M. Modi, B. Dehury, 2015, Journal of molecular graphics & modelling.

Zinc oxide nanostructures as effective pesticide controllers: Sensing and degradation of pesticides

Bikash R. Sahoo, D. Sahoo, S. Sahoo, 2021 .

Structure of fish Toll-like receptors (TLR) and NOD-like receptors (NLR)

Bikash R. Sahoo, 2020, International Journal of Biological Macromolecules.

Identification of MDP (muramyl dipeptide)-binding key domains in NOD2 (nucleotide-binding and oligomerization domain-2) receptor of Labeo rohita

Bikash R. Sahoo, M. Dikhit, M. Samanta, 2012, Fish Physiology and Biochemistry.

Conformational Tuning of Amylin by Charged SMA Copolymers

Bikash R. Sahoo, M. Ivanova, T. Ando, 2020, bioRxiv.

Lifespan associated global patterns of coherent neural communication

Gustavo Deco, Arpan Banerjee, Bikash Sahoo, 2020, NeuroImage.

Investigation of the effects of two major secretory granules components, insulin and zinc, on human-IAPP amyloid aggregation and membrane damage.

Bikash R. Sahoo, A. Ramamoorthy, M. Decossas, 2021, Chemistry and physics of lipids.

Elucidation of Novel Structural Scaffold in Rohu TLR2 and Its Binding Site Analysis with Peptidoglycan, Lipoteichoic Acid and Zymosan Ligands, and Downstream MyD88 Adaptor Protein

Bikash R. Sahoo, M. Dikhit, M. Samanta, 2013, BioMed research international.

Structural insights of rohu TLR3, its binding site analysis with fish reovirus dsRNA, poly I:C and zebrafish TRIF.

Bikash R. Sahoo, M. Dikhit, M. Samanta, 2012, International journal of biological macromolecules.

3D modeling and molecular dynamics simulation of an immune-regulatory cytokine, interleukin-10, from the Indian major carp, Catla catla

Bikash R. Sahoo, M. Samanta, B. Swain, 2012, Journal of Molecular Modeling.

Structural and functional insights into CARDs of zebrafish (Danio rerio) NOD1 and NOD2, and their interaction with adaptor protein RIP2.

Bikash R. Sahoo, S. K. Pradhan, D. Panda, 2015, Molecular bioSystems.

Structural Models of Zebrafish (Danio rerio) NOD1 and NOD2 NACHT Domains Suggest Differential ATP Binding Orientations: Insights from Computational Modeling, Docking and Molecular Dynamics Simulations

Sushma Rani Martha, Bikash R. Sahoo, S. K. Pradhan, 2015, PloS one.

Degradation of Alzheimer's amyloid-β by a catalytically inactive insulin-degrading enzyme.

Bikash R. Sahoo, R. Ahuja, Wei-Jen Tang, 2021, Journal of molecular biology.

Diverse Structural Conversion and Aggregation Pathways of Alzheimer's Amyloid-β (1-40).

Bikash R. Sahoo, H. Won, T. Fujiwara, 2019, ACS nano.

Nociceptors Boost the Resolution of Fungal Osteoinflammation via the TRP Channel-CGRP-Jdp2 Axis.

Mikaël M. Martino, Bikash R. Sahoo, S. Akira, 2017, Cell reports.

Membrane Mediated Antimicrobial and Antitumor Activity of Cathelicidin 6: Structural Insights from Molecular Dynamics Simulation on Multi-Microsecond Scale

Bikash R. Sahoo, T. Fujiwara, 2016, PloS one.

Understanding the distinguishable structural and functional features in zebrafish TLR3 and TLR22, and their binding modes with fish dsRNA viruses: an exploratory structural model analysis

Bikash R. Sahoo, S. K. Lenka, M. Dikhit, 2014, Amino Acids.

Induction of toll-like receptor (TLR) 2, and MyD88-dependent TLR- signaling in response to ligand stimulation and bacterial infections in the Indian major carp, mrigal (Cirrhinus mrigala)

Bikash R. Sahoo, M. Samanta, B. Swain, 2011, Molecular Biology Reports.

Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis.

Son Tung Ngo, Bikash R. Sahoo, R. Nussinov, 2021, Chemical reviews.

Alzheimer's amyloid-beta intermediates generated using polymer-nanodiscs.

Bikash R. Sahoo, Andrea K. Stoddard, M. Ivanova, 2018, Chemical communications.

Alzheimer’s Amyloid-Beta Intermediates Generated by Polymer-Nanodiscs

Bikash R. Sahoo, Andrea K. Stoddard, M. Ivanova, 2018, bioRxiv.

Conformational Tuning of Amylin by Charged Styrene-maleic-acid Copolymers

Bikash R. Sahoo, M. Ivanova, B. Reif, 2021, Journal of Molecular Biology.

Zinc Boosts EGCG’s hIAPP Amyloid Inhibition Both in Solution and Membrane

Bikash R. Sahoo, M. Ivanova, Misaki Kinoshita, 2018, bioRxiv.

Structural Interaction of Apolipoprotein A-I Mimetic Peptide with Amyloid-β Generates Toxic Hetero-oligomers.

Bikash R. Sahoo, Andrea K. Stoddard, J. Nowick, 2019, Journal of molecular biology.

Apolipoprotein A-I Mimetic 4F Peptide Generates Amyloid Cytotoxins by Forming Hetero-oligomers with β-amyloid

Bikash R. Sahoo, Andrea K. Stoddard, J. Nowick, 2019, bioRxiv.

Activation of Nucleotide-Binding Oligomerization Domain 1 (NOD1) Receptor Signaling in Labeo rohita by iE-DAP and Identification of Ligand-Binding Key Motifs in NOD1 by Molecular Modeling and Docking

Bikash R. Sahoo, M. Dikhit, M. Samanta, 2013, Applied Biochemistry and Biotechnology.

SERF, a family of tiny highly conserved, highly charged proteins with enigmatic functions

Bikash R. Sahoo, J. Bardwell, 2022, The FEBS journal.

Hierarchal polyaniline-folic acid nanostructures act as a platform for electrochemical detection of tumor cells.

Martin C. Hartel, Bikash R. Sahoo, M. Mazloum‐Ardakani, 2022, Analytical biochemistry.

Growing tool-kit of photosensitizers for clinical and non-clinical applications.

Bikash R. Sahoo, Dhermendra K. Tiwari, M. Tiwari, 2020, Journal of materials chemistry. B.

Activity of a novel sulfonamide compound 2-nitro-N-(pyridin-2-ylmethyl)benzenesulfonamide against Leishmania donovani

Md. Yousuf Ansari, Bikash R. Sahoo, R. Kar, 2016, Drug design, development and therapy.

Computational prediction and analysis of potential antigenic CTL epitopes in Zika virus: A first step towards vaccine development.

Pradeep Das, Md. Yousuf Ansari, Bikash R. Sahoo, 2016, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Molecular characterization of nucleotide binding and oligomerization domain (NOD)-2, analysis of its inductive expression and down-stream signaling following ligands exposure and bacterial infection in rohu (Labeo rohita).

Bikash R. Sahoo, A. E. Eknath, P. Routray, 2012, Developmental and comparative immunology.

Toll-Like Receptor 22 in Labeo rohita: Molecular Cloning, Characterization, 3D Modeling, and Expression Analysis Following Ligands Stimulation and Bacterial Infection

Bikash R. Sahoo, M. Samanta, P. Jayasankar, 2014, Applied Biochemistry and Biotechnology.

Identification of MDP (muramyl dipeptide)-binding key domains in NOD2 (nucleotide-binding and oligomerization domain-2) receptor of Labeo rohita

Bikash R. Sahoo, M. Dikhit, M. Samanta, 2013, Fish Physiology and Biochemistry.

Molecular characterization of toll-like receptor 2 (TLR2), analysis of its inductive expression and associated down-stream signaling molecules following ligands exposure and bacterial infection in the Indian major carp, rohu (Labeo rohita).

Bikash R. Sahoo, M. Samanta, B. Swain, 2012, Fish & shellfish immunology.

Induction of toll-like receptor (TLR) 2, and MyD88-dependent TLR- signaling in response to ligand stimulation and bacterial infections in the Indian major carp, mrigal (Cirrhinus mrigala)

Bikash R. Sahoo, M. Samanta, B. Swain, 2012, Molecular Biology Reports.

Molecular characterization, inductive expression and mechanism of interleukin‐10 gene induction in the Indian major carp, catla (Catla catla)

Bikash R. Sahoo, B. K. Mishra, A. E. Eknath, 2012 .

Self-Assembly of Polymer-Encased Lipid Nanodiscs and Membrane Protein Reconstitution.

Bikash R. Sahoo, A. Ramamoorthy, K. C. Moharana, 2019, The journal of physical chemistry. B.

Self-assembly of polymer-encased lipid nanodiscs and membrane protein reconstitution

Bikash R. Sahoo, A. Ramamoorthy, K. C. Moharana, 2018, bioRxiv.

Spontaneous Lipid Nanodisc Fomation by Amphiphilic Polymethacrylate Copolymers.

Bikash R. Sahoo, A. Ramamoorthy, J. Kikuchi, 2017, Journal of the American Chemical Society.

Understanding the distinguishable structural and functional features in zebrafish TLR3 and TLR22, and their binding modes with fish dsRNA viruses: an exploratory structural model analysis

Bikash R. Sahoo, S. K. Lenka, M. Dikhit, 2014, Amino Acids.

High-Throughput Screening at the Membrane Interface Reveals Inhibitors of Amyloid-β.

Bikash R. Sahoo, Andrea K. Stoddard, M. Ivanova, 2020, Biochemistry.

Genetic diversity analysis of the thyroglobulin gene promoter in buffalo and other bovines

Bikash R. Sahoo, M. Mukesh, S. Mishra, 2014 .

Inhibition of Zika virus replication by G-quadruplex-binding ligands

Bikash R. Sahoo, Aryamav Pattnaik, U. Shankar, 2021, Molecular therapy. Nucleic acids.

Mechanistic Target of Rapamycin Signaling Activation Antagonizes Autophagy To Facilitate Zika Virus Replication

Bikash R. Sahoo, Aryamav Pattnaik, Arun S. Annamalai, 2020, Journal of Virology.

The ATP Transporter VNUT Mediates Induction of Dectin-1-Triggered Candida Nociception

Mikaël M. Martino, Bikash R. Sahoo, S. Akira, 2018, iScience.

High-resolution probing of early events in amyloid-β aggregation related to Alzheimer's disease.

Bikash R. Sahoo, A. Ramamoorthy, Sarah J Cox, 2020, Chemical communications.

High-Speed Atomic Force Microscopy Reveals the Structural Dynamics of the Amyloid-β and Amylin Aggregation Pathways

Bikash R. Sahoo, A. Ramamoorthy, K. Ono, 2020, International journal of molecular sciences.

An Attenuated Zika Virus Encoding Non-Glycosylated Envelope (E) and Non-Structural Protein 1 (NS1) Confers Complete Protection against Lethal Challenge in a Mouse Model

Bikash R. Sahoo, Aryamav Pattnaik, Arun S. Annamalai, 2019, Vaccines.

Zika Virus Encoding Nonglycosylated Envelope Protein Is Attenuated and Defective in Neuroinvasion

Bikash R. Sahoo, Aryamav Pattnaik, Arun S. Annamalai, 2017, Journal of Virology.

Structural and dynamic investigation of bovine folate receptor alpha (FOLR1), and role of ultra-high temperature processing on conformational and thermodynamic characteristics of FOLR1-folate complex.

Bikash R. Sahoo, S. K. Pradhan, S. K. Lenka, 2014, Colloids and surfaces. B, Biointerfaces.

Current Status of Zika Virus Vaccines: Successes and Challenges

Bikash R. Sahoo, Aryamav Pattnaik, A. K. Pattnaik, 2020, Vaccines.

Amylin and beta amyloid proteins interact to form amorphous heterocomplexes with enhanced toxicity in neuronal cells

Bikash R. Sahoo, R. Martins, C. Bond, 2020, Scientific Reports.

Sequence based structural characterization and genetic diversity analysis across coding and promoter regions of goat Toll-like receptor 5 gene.

Bikash R. Sahoo, S. Mishra, R. Mahajan, 2014, Gene.

Exploration of the binding modes of buffalo PGRP1 receptor complexed with meso-diaminopimelic acid and lysine-type peptidoglycans by molecular dynamics simulation and free energy calculation.

Bikash R. Sahoo, S. K. Pradhan, S. K. Lenka, 2014, Chemico-biological interactions.

Studies on adsorption of surfactants on solid-liquid interface and its importance in slurry-rheology

Bikash R. Sahoo, S. Das, 2007 .

Structural and functional investigation of zebrafish (Danio rerio) NOD1 leucine rich repeat domain and its interaction with iE-DAP.

Bijay Kumar Behera, Aritra Bej, Bikash R. Sahoo, 2014, Molecular bioSystems.

Computational elucidation of potential antigenic CTL epitopes in Ebola virus.

Bikash R. Sahoo, G. Sahoo, M. Dikhit, 2015, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Degradation of Alzheimer’s amyloid-β by a catalytically inactive insulin-degrading enzyme

Bikash R. Sahoo, R. Ahuja, Wei-Jen Tang, 2020, bioRxiv.

Free Gangliosides Can Alter Amyloid-β Aggregation.

Bikash R. Sahoo, C. Brooks, A. Ramamoorthy, 2022, The journal of physical chemistry letters.

Nanodisc-Forming Scaffold Protein Promoted Retardation of Amyloid-Beta Aggregation.

Bikash R. Sahoo, Andrea K. Stoddard, C. Fierke, 2018, Journal of molecular biology.

Lipid-Chaperone Hypothesis: A Common Molecular Mechanism of Membrane Disruption by Intrinsically Disordered Proteins.

Bikash R. Sahoo, Jennifer C. Lee, A. Ramamoorthy, 2020, ACS chemical neuroscience.

Amylin and beta amyloid proteins interact to form amorphous heterocomplexes with enhanced toxicity in neuronal cells

Bikash R. Sahoo, R. Martins, C. Bond, 2020, Scientific Reports.

Redox Regulation and Metabolic Dependency of Zika Virus Replication: Inhibition by Nrf2-Antioxidant Response and NAD(H) Antimetabolites

Bikash R. Sahoo, R. Powers, Aryamav Pattnaik, 2023, Journal of virology.