Witold Dyrka

发表

Accuracy in Predicting Secondary Structure of Ionic Channels

Jean-Christophe Nebel, Malgorzata Kotulska, Bogumil Konopka, 2009, ICCCI.

Structural annotation of proteins using probabilistic context-free grammars

Jean-Christophe Nebel, Malgorzata Kotulska, Witold Dyrka, 2012 .

How to measure the topological quality of protein grammars? pdf

Olgierd Unold, Witold Dyrka, François Coste, 2016, ArXiv.

Towards 3D Modeling of Interacting TM Helix Pairs Based on Classification of Helix Pair Sequence

Jean-Christophe Nebel, Malgorzata Kotulska, Witold Dyrka, 2010, PRIB.

How to measure the topological quality of protein parse trees?

Mateusz Pyzik, Witold Dyrka, François Coste, 2018, ICGI.

Optimization of 3D Poisson–Nernst‐Planck model for fast evaluation of diverse protein channels

Malgorzata Kotulska, Witold Dyrka, Maciej M. Bartuzel, 2013, Proteins.

A stochastic context free grammar based framework for analysis of protein sequences

Jean-Christophe Nebel, Witold Dyrka, W. Dyrka, 2009, BMC Bioinformatics.

Ion flux through membrane channels—An enhanced algorithm for the Poisson‐Nernst‐Planck model

Malgorzata Kotulska, Witold Dyrka, Andy T. Augousti, 2008, J. Comput. Chem..

Poster: Structure prediction of a protein channel based on probabilistic formal grammars and the continuous ion flow model

Jean-Christophe Nebel, Witold Dyrka, Margaret Kotulska, 2008 .

Fast assessment of structural models of ion channels based on their predicted current–voltage characteristics

Witold Dyrka, Monika Kurczyńska, Bogumił M Konopka, 2015, Proteins.

The first MICCAI challenge on PET tumor segmentation

Christian Barillot, Tristan Glatard, Witold Dyrka, 2018, Medical Image Anal..

Probabilistic grammatical model for helix‐helix contact site classification

Jean-Christophe Nebel, Malgorzata Kotulska, Witold Dyrka, 2013, Algorithms for Molecular Biology.

A probabilistic context-free grammar for the detection of binding sites from a protein sequence

Jean-Christophe Nebel, Witold Dyrka, W. Dyrka, 2007, BMC Systems Biology.

International Conference on Grammatical Inference 2018: Preface

Olgierd Unold, Witold Dyrka, Wojciech Wieczorek, 2018, ICGI.

Machine learning methods for accurate delineation of tumors in PET images pdf

Witold Dyrka, Jakub Czakon, Filip Drapejkowski, 2016, ArXiv.

Where the context-free grammar meets the contact map: a probabilistic model of protein sequences aware of contacts between amino acids

Witold Dyrka, Hugo Talibart, François Coste, 2018 .

Quantiprot - a Python package for quantitative analysis of protein sequences

Bogumil Konopka, Witold Dyrka, Marta Marciniak, 2017, BMC Bioinformatics.

Probabilistic grammatical model of protein language and its application to helix-helix contact site classification

Jean-Christophe Nebel, Malgorzata Kotulska, Witold Dyrka, 2013 .

Probabilistic context-free grammars for classification of helix-helix contact sites and recognition of amyloidogenic peptides

Jean-Christophe Nebel, Malgorzata Kotulska, Witold Dyrka, 2013 .

Estimating probabilistic context-free grammars for proteins using contact map constraints

Witold Dyrka, François Coste, Juliette Talibart, 2018, PeerJ.

Searching for universal model of amyloid signaling motifs using probabilistic context-free grammars

Witold Dyrka, Marlena Gasior-Glogowska, Monika Szefczyk, 2021, BMC Bioinform..

Diversity and Variability of NOD-Like Receptors in Fungi

Bostjan Kobe, Witold Dyrka, Pascal Durrens, 2014, Genome biology and evolution.

Probabilistic context-free grammar for pattern detection in protein sequences

Witold Dyrka, W. Dyrka, 2007 .

Identification of NLR-associated amyloid signaling motifs in filamentous bacteria

Witold Dyrka, Brice Kauffmann, B. Salin, 2020, bioRxiv.