Gary K. Chen

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Convex Clustering: An Attractive Alternative to Hierarchical Clustering

Gary K. Chen, Eric C. Chi, John M. O. Ranola, 2014, PLoS Comput. Biol..

Mendel-GPU: haplotyping and genotype imputation on graphics processing units

Kai Wang, Gary K. Chen, Kenneth Lange, 2012, Bioinform..

Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation

Pedro C. Avila, Eran Halperin, Gary K. Chen, 2013, Bioinform..

al3c: high-performance software for parameter inference using Approximate Bayesian Computation

Gary K. Chen, Paul Marjoram, Alex H. Stram, 2015, Bioinform..

A scalable and portable framework for massively parallel variable selection in genetic association studies

Gary K. Chen, 2012, Bioinform..

Discovering epistasis in large scale genetic association studies by exploiting graphics cards

Gary K. Chen, Yunfei Guo, Yunfei Guo, 2013, Front. Genet..

Iterative hard thresholding for model selection in genome‐wide association studies

Gary K. Chen, Kenneth Lange, Kevin L. Keys, 2016, Genetic epidemiology.

Cit: Hypothesis Testing Software for Mediation Analysis in Genomic Applications

Gary K. Chen, Joshua Millstein, Carrie V. Breton, 2016, Bioinform..

Precise inference of copy number alterations in tumor samples from SNP arrays

Kai Wang, Gary K. Chen, Xiao Chang, 2013, Bioinform..

Genotype imputation via matrix completion

Gary K. Chen, Eric C. Chi, K. Lange, 2013, Genome research.

A Meta-Analysis Identifies New Loci Associated with Body Mass index in Individuals of African Ancestry

Xiaofeng Zhu, Olufunmilayo I. Olopade, Alex P. Reiner, 2013, Nature Genetics.

Enhanced Statistical Tests for GWAS in Admixed Populations: Assessment using African Americans from CARe and a Breast Cancer Consortium

Gary K. Chen, Cameron D. Palmer, M. Fornage, 2011, PLoS genetics.

Genome-wide association study of prostate cancer in men of African ancestry identifies a susceptibility locus at 17q21

Gary K. Chen, M. C. Leske, J. Witte, 2011, Nature Genetics.

Meta-analysis identifies common variants associated with body mass index in East Asians

Gary K. Chen, F. Hu, Y. Okada, 2012, Nature Genetics.

Mapping adipose and muscle tissue expression quantitative trait loci in African Americans to identify genes for type 2 diabetes and obesity

Donald W. Bowden, Barry I. Freedman, Nisa M. Maruthur, 2016, Human Genetics.

The landscape of recombination in African Americans

Xiaofeng Zhu, Alex P. Reiner, Jasmin Divers, 2011, Nature.

Admixture mapping identifies a locus on 6q25 associated with breast cancer risk in US Latinas.

Gary K. Chen, Bogdan Pasaniuc, Christopher A Haiman, 2012, Human molecular genetics.

A genome-wide association study of breast cancer in women of African ancestry

Clement Adebamowo, Olufunmilayo I. Olopade, Gary K. Chen, 2012, Human Genetics.

A Genome-Wide Scan for Breast Cancer Risk Haplotypes among African American Women

Gary K. Chen, Chi Song, Stephen J. Chanock, 2013, PloS one.

Incorporating biological information into association studies of sequencing data

Gary K. Chen, A. DeStefano, Peng Wei, 2011, Genetic epidemiology.

Cancer Risk in US Latinas

Gary K. Chen, Christopher R. Gignoux, E. Ziv, 2012 .

Methodological Considerations in Estimation of Phenotype Heritability Using Genome-Wide SNP Data, Illustrated by an Analysis of the Heritability of Height in a Large Sample of African Ancestry Adults

Gary K. Chen, M. C. Leske, J. Witte, 2015, PloS one.

A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.

Jane E. Carpenter, Daniel J. Park, Gary K. Chen, 2012, Human molecular genetics.

Population Genetic Structure and Origins of Native Hawaiians in the Multiethnic Cohort Study

Gary K. Chen, Christopher R. Gignoux, R. Saxena, 2012, PloS one.

Fine-mapping of breast cancer susceptibility loci characterizes genetic risk in African Americans.

Gary K. Chen, Christopher A Haiman, Brian E Henderson, 2011, Human molecular genetics.

Correction: Identification, Replication, and Fine-Mapping of Loci Associated with Adult Height in Individuals of African Ancestry

Gary K. Chen, Sanjay R. Patel, J. Witte, 2011, PLoS Genetics.

Evaluating Genetic Risk for Prostate Cancer among Japanese and Latinos

Gary K. Chen, Yusuke Nakamura, R. Eeles, 2012, Cancer Epidemiology, Biomarkers & Prevention.

Genome-wide association study of age at menarche in African-American women.

Gary K. Chen, C. Carlson, E. Demerath, 2013, Human molecular genetics.

A common variant at the TERT-CLPTM1L locus is associated with estrogen receptor–negative breast cancer

Jane E. Carpenter, Peter Kraft, Gary K. Chen, 2011, Nature Genetics.

A comprehensive examination of breast cancer risk loci in African American women.

Gary K. Chen, R. Millikan, A. Olshan, 2014, Human molecular genetics.

Genome-wide association studies identify four ER negative–specific breast cancer risk loci

Patrick Neven, Michael Jones, Wei Lu, 2013, Nature Genetics.

Copy number alterations in prostate tumors and disease aggressiveness

Gary K. Chen, J. Witte, A. Levin, 2012, Genes, chromosomes & cancer.

Fast and flexible simulation of DNA sequence data.

Gary K. Chen, Paul Marjoram, Gary K Chen, 2008, Genome research.

Wall Fast and flexible simulation of DNA sequence data Material Supplemental

Gary K. Chen, J. Wall, P. Marjoram, 2008 .

Accommodating chromosome inversions in linkage analysis.

Gary K. Chen, K. Lange, R. Ophoff, 2006, American journal of human genetics.

Association testing in a linked region using large pedigrees.

Gary K. Chen, K. Lange, R. Cantor, 2005, American Journal of Human Genetics.

Meta-analysis of loci associated with age at natural menopause in African-American women.

Gary K. Chen, Kathleen F. Kerr, Jeanette S. Andrews, 2014, Human molecular genetics.

Hierarchical modeling identifies novel lung cancer susceptibility variants in inflammation pathways among 10,140 cases and 11,012 controls

Gary K. Chen, J. Witte, S. Bull, 2013, Human Genetics.

Mapping adipose and muscle tissue expression quantitative trait loci in African Americans to identify genes for type 2 diabetes and obesity

Gary K. Chen, Nicholette D. Palmer, C. Haiman, 2016, Human Genetics.

Characterizing Genetic Risk at Known Prostate Cancer Susceptibility Loci in African Americans

Gary K. Chen, J. Witte, M. Thun, 2011, PLoS genetics.

Common variants at 11q12, 10q26 and 3p11.2 are associated with prostate cancer susceptibility in Japanese

Gary K. Chen, Hiroyuki Takahashi, Yusuke Nakamura, 2012, Nature Genetics.

Reproducibility, Performance, and Clinical Utility of a Genetic Risk Prediction Model for Prostate Cancer in Japanese

Gary K. Chen, Yusuke Nakamura, T. Morizono, 2012, PloS one.

HadoopCNV: A dynamic programming imputation algorithm to detect copy number variants from sequencing data

Gary K. Chen, Hui Yang, Max M. He, 2017, bioRxiv.

Genetic Variation in Native Americans, Inferred from Latino SNP and Resequencing Data

Gary K. Chen, Christopher R. Gignoux, J. Wall, 2011, Molecular biology and evolution.

The Potential for Enhancing the Power of Genetic Association Studies in African Americans through the Reuse of Existing Genotype Data

Gary K. Chen, R. Millikan, S. Chanock, 2010, PLoS genetics.

Deep targeted sequencing of 12 breast cancer susceptibility regions in 4611 women across four different ethnicities

Gary K. Chen, A. Price, B. Henderson, 2016, Breast Cancer Research.

A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.

Jane E. Carpenter, Daniel J. Park, Gary K. Chen, 2012, Human molecular genetics.

Stochastic Epigenetic Mutations Influence Parkinson’s Disease Risk, Progression, and Mortality

Gary K. Chen, S. Horvath, B. Ritz, 2021, Journal of Parkinson's Disease.

Enriching the analysis of genomewide association studies with hierarchical modeling.

Gary K. Chen, John S Witte, Gary K Chen, 2007, American journal of human genetics.

Identification, Replication, and Fine-Mapping of Loci Associated with Adult Height in Individuals of African Ancestry

Gary K. Chen, Cameron D. Palmer, J. Witte, 2011, PLoS genetics.

Deep targeted sequencing of 12 breast cancer susceptibility regions in 4611 women across four different ethnicities

Gary K. Chen, A. Price, B. Henderson, 2016, Breast Cancer Research.

A genome-wide association study of breast cancer in women of African ancestry

Gary K. Chen, M. C. Leske, R. Millikan, 2012, Human Genetics.

Genome-wide meta-analyses of smoking behaviors in African Americans

Gary K. Chen, J. Witte, M. Fornage, 2012, Translational Psychiatry.

Using biological knowledge to discover higher order interactions in genetic association studies

Gary K. Chen, D. Thomas, 2010, Genetic epidemiology.

Genome-wide association study of age at menarche in African-American women.

Gary K. Chen, Kathleen F. Kerr, C. Carlson, 2013, Human molecular genetics.

Genome-wide association study of prostate cancer in men of African ancestry identifies a susceptibility locus at 17q21

Gary K. Chen, J. Witte, M. Thun, 2011, Nature Genetics.

Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation

Gary K. Chen, Christopher R. Gignoux, E. Halperin, 2013, Bioinform..

A Meta-Analysis Identifies New Loci Associated with Body Mass index in Individuals of African Ancestry

Gary K. Chen, Scott M. Williams, Nicholette D. Palmer, 2013, Nature Genetics.