Paul P. Gardner

发表

Improving recombinant protein production using TISIGNER.com

Bikash K. Bhandari, Chun Shen Lim, Paul P. Gardner, 2020, bioRxiv.

Rfam 12.0: updates to the RNA families database

Robert D. Finn, Sean R. Eddy, Alex Bateman, 2014, Nucleic Acids Res..

Rfam: updates to the RNA families database

Robert D. Finn, Sean R. Eddy, Alex Bateman, 2008, Nucleic Acids Res..

Rfam: Wikipedia, clans and the “decimal” release

Robert D. Finn, Sean R. Eddy, Alex Bateman, 2010, Nucleic Acids Res..

A comparison of RNA folding measures

Vincent Moulton, Eva Freyhult, Paul P. Gardner, 2005, BMC Bioinformatics.

Making your database available through Wikipedia: the pros and cons

Robert D. Finn, Alex Bateman, Paul P. Gardner, 2011, Nucleic Acids Res..

Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling

Wenting Liu, Paul P. Gardner, Lars Barquist, 2014, PLoS Comput. Biol..

A Search for H/ACA SnoRNAs in Yeast Using MFE Secondary Structure Prediction

Vincent Moulton, Paul P. Gardner, Michael D. Hendy, 2003, Bioinform..

An evaluation of the accuracy and speed of metagenome analysis tools

Paul P. Gardner, Stinus Lindgreen, Karen L. Adair, 2015 .

A meta-analysis of bioinformatics software benchmarks reveals that publication-bias unduly influences software accuracy

Aleksandra Pawlik, Paul P. Gardner, Sinan U. Umu, 2017 .

Solubility-Weighted Index: fast and accurate prediction of protein solubility

Bikash K. Bhandari, Chun Shen Lim, Paul P. Gardner, 2020, bioRxiv.

Identifying accurate metagenome and amplicon software via a meta-analysis of benchmarking studies

Robert D. Finn, Paul P. Gardner, Xochitl C. Morgan, 2017 .

Sequence analysis Measuring covariation in RNA alignments : physical realism improves information measures

Paul P. Gardner, Anders Krogh, Stinus Lindgreen, 2006 .

A comprehensive benchmark of RNA–RNA interaction prediction tools for all domains of life

Paul P. Gardner, Sinan U. Umu, P. Gardner, 2016, Bioinform..

MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing

Paul P. Gardner, Anders Krogh, Stinus Lindgreen, 2007, Bioinform..

A comprehensive comparison of comparative RNA structure prediction approaches

Robert Giegerich, Paul P. Gardner, R. Giegerich, 2004, BMC Bioinformatics.

Crowdsourcing RNA structural alignments with an online computer game

Jérôme Waldispühl, Paul P. Gardner, Arthur Kam, 2014, bioRxiv.

Ten Simple Rules for Editing Wikipedia

Alex Bateman, Paul P. Gardner, Magnus Manske, 2010, PLoS Comput. Biol..

A hidden Markov model approach for determining expression from genomic tiling micro arrays

Paul P. Gardner, Anders Krogh, Kasper Munch, 2006, BMC Bioinformatics.

Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies

Robert D. Finn, Paul P. Gardner, Xochitl C. Morgan, 2017, bioRxiv.

Multiple alignment and structure prediction of non-coding RNA sequences

Paul P. Gardner, Anders Krogh, Stinus Lindgreen, 2007, BMC Bioinformatics.

A profile-based method for identifying functional divergence of orthologous genes in bacterial genomes

Paul P. Gardner, Lars Barquist, Nicole E. Wheeler, 2016, bioRxiv.

An evaluation of the accuracy and speed of metagenome analysis tools

Paul P. Gardner, Stinus Lindgreen, Karen L. Adair, 2015, Scientific Reports.

Crowdsourcing RNA structural alignments with an online computer game

Jérôme Waldispühl, Paul P. Gardner, Arthur Kam, 2014 .

Comparative Analysis of RNA Families Reveals Distinct Repertoires for Each Domain of Life

Paul P. Gardner, Anthony M. Poole, Marc P. Hoeppner, 2012, PLoS Comput. Biol..

Rfam 11.0: 10 years of RNA families

Sean R. Eddy, Alex Bateman, Ruth Y. Eberhardt, 2012, Nucleic Acids Res..

A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium

Alex Bateman, Paul P. Gardner, Lars Barquist, 2013, Nucleic acids research.

Why so narrow: Distribution of anti-sense regulated, type I toxin-antitoxin systems compared with type II and type III systems

Paul P. Gardner, Jack A. Heinemann, Nicole E. Wheeler, 2017, RNA biology.

Identification of miRNA targets with stable isotope labeling by amino acids in cell culture

Paul P. Gardner, Peter Arctander, Jeppe Vinther, 2006, Nucleic acids research.

Convergent regulatory evolution and the origin of flightlessness in palaeognathous birds

Paul P. Gardner, Jun S. Liu, Timothy B Sackton, 2018, bioRxiv.

RNA Folding Argues Against a Hot-Start Origin of Life

Vincent Moulton, Paul P. Gardner, David Penny, 2000, Journal of Molecular Evolution.

RNIE: genome-wide prediction of bacterial intrinsic terminators

Alex Bateman, Zasha Weinberg, Paul P. Gardner, 2011, Nucleic acids research.