Remo Rohs

发表

Deep Graph Embedding for Ranking Optimization in E-commerce

Zhao Li, Qiong Luo, Jingren Zhou, 2018, CIKM.

Using internal and collective variables in Monte Carlo simulations of nucleic acid structures: Chain breakage/closure algorithm and associated Jacobians

Remo Rohs, Heinz Sklenar, Daniel Wüstner, 2006, J. Comput. Chem..

Quantum annealing versus classical machine learning applied to a simplified computational biology problem

Daniel A. Lidar, Remo Rohs, Richard Y. Li, 2018, npj Quantum Information.

DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding

Lin Yang, Remo Rohs, Renato Paro, 2015, Bioinform..

DNAproDB: an interactive tool for structural analysis of DNA–protein complexes

Helen M. Berman, Remo Rohs, Jared M. Sagendorf, 2017, Nucleic Acids Res..

TFBSshape: a motif database for DNA shape features of transcription factor binding sites

Lin Yang, Wyeth W. Wasserman, Remo Rohs, 2013, Nucleic Acids Res..

DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale

Lin Yang, Remo Rohs, Yan Lu, 2013, Nucleic Acids Res..

DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding

William Stafford Noble, Lin Yang, Remo Rohs, 2016, bioRxiv.

GBshape: a genome browser database for DNA shape annotations

Lin Yang, Stephen C. J. Parker, Remo Rohs, 2014, Nucleic Acids Res..

A map of minor groove shape and electrostatic potential from hydroxyl radical cleavage patterns of DNA.

Stephen C. J. Parker, Remo Rohs, Peng Liu, 2011, ACS chemical biology.

Electrostatic Interactions between Arginines and the Minor Groove in the Nucleosome

Remo Rohs, Barry Honig, R. Mann, 2010, Journal of biomolecular structure & dynamics.

Molecular flexibility in ab initio drug docking to DNA: binding-site and binding-mode transitions in all-atom Monte Carlo simulations

Remo Rohs, Heinz Sklenar, R. Rohs, 2005, Nucleic acids research.

Covariation between homeodomain transcription factors and the shape of their DNA binding sites

Remo Rohs, Yael Mandel-Gutfreund, Tianyin Zhou, 2013, Nucleic acids research.

High-resolution profiling of Drosophila replication start sites reveals a DNA shape and chromatin signature of metazoan origins.

Remo Rohs, Renato Paro, Christian Beisel, 2015, Cell reports.

Methylene Blue Binding to DNA with Alternating GC Base Sequence: A Modeling Study

Remo Rohs, Heinz Sklenar, Beate Röder, 2000 .

ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo

Beibei Xin, Remo Rohs, Steven Henikoff, 2015, Nature Communications.

Structure of p53 binding to the BAX response element reveals DNA unwinding and compression to accommodate base-pair insertion

Remo Rohs, Peter Z. Qin, Yongheng Chen, 2013, Nucleic acids research.

Conformations of p53 response elements in solution deduced using site-directed spin labeling and Monte Carlo sampling

Remo Rohs, Peter Z. Qin, Yongheng Chen, 2013, Nucleic acids research.

CRISPR-Cas9 Mediated DNA Unwinding Detected Using Site-Directed Spin Labeling.

Remo Rohs, Wei Jiang, Rosa Di Felice, 2017, ACS chemical biology.

Corrigendum: Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity

Martin Vingron, Remo Rohs, Morgane Thomas-Chollier, 2016, Nature Communications.

Exposing the secrets of sex determination

Remo Rohs, Lin Yang, Ana Carolina Dantas Machado, 2015, Nature Structural &Molecular Biology.

Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity

Martin Vingron, Remo Rohs, Morgane Thomas-Chollier, 2016, Nature Communications.

Mechanism of origin DNA recognition and assembly of an initiator-helicase complex by SV40 large tumor antigen.

Remo Rohs, Ana Carolina Dantas Machado, R. Rohs, 2013, Cell reports.

Control of DNA minor groove width and Fis protein binding by the purine 2-amino group

Remo Rohs, Duilio Cascio, Rosa Di Felice, 2013, Nucleic acids research.

Structural studies of p53 inactivation by DNA-contact mutations and its rescue by suppressor mutations via alternative protein–DNA interactions

Remo Rohs, R. Rohs, H. Rozenberg, 2013, Nucleic acids research.

Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator

Remo Rohs, Ying Li, Tsu-Pei Chiu, 2015, Nature Communications.

DNA binding by GATA transcription factor suggests mechanisms of DNA looping and long-range gene regulation.

Remo Rohs, Ana Carolina Dantas Machado, Yongheng Chen, 2012, Cell reports.