Gert Hulselmans

发表

Cis-topic modelling of single-cell epigenomes

Stein Aerts, Carmen Bravo González-Blas, Liesbeth Minnoye, 2018, bioRxiv.

cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data

Stein Aerts, Liesbeth Minnoye, Dafni Papasokrati, 2019, Nature Methods.

A scalable SCENIC workflow for single-cell gene regulatory network analysis

Yvan Saeys, Robrecht Cannoodt, Wouter Saelens, 2020, Nature Protocols.

Integrative analysis of regulatory tracks for the identification of direct TF-target interactions

Stein Aerts, Gert Hulselmans, Hana Imrichova, 2013 .

i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly

Stein Aerts, Gert Hulselmans, Delphine Potier, 2015, Nucleic Acids Res..

SCENIC: Single-cell regulatory network inference and clustering

Pierre Geurts, Carmen Bravo González-Blas, Sara Aibar, 2017 .

iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections

Stein Aerts, Gert Hulselmans, Valerie Christiaens, 2014, PLoS Comput. Biol..

Comprehensive Analysis of Transcriptome Variation Uncovers Known and Novel Driver Events in T-Cell Acute Lymphoblastic Leukemia

Stein Aerts, Gert Hulselmans, Frank Speleman, 2013, PLoS genetics.

Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia

Stein Aerts, Gert Hulselmans, Jan Cools, 2012, Nature Genetics.

Identification of Lineage-Specific Cis-Regulatory Modules Associated with Variation in Transcription Factor Binding and Chromatin Activity Using Ornstein–Uhlenbeck Models

Stein Aerts, Gert Hulselmans, Valerie Christiaens, 2015, Molecular biology and evolution.

Mapping gene regulatory networks in Drosophila eye development by large-scale transcriptome perturbations and motif inference.

Pierre Geurts, Stein Aerts, Gert Hulselmans, 2014, Cell reports.