Martin Kollmar

发表

Frontmatter, Table of Contents, Preface, Conference Organization

Martin Kollmar, Edgar Wingender, Tim Beißbarth, 2013, German Conference on Bioinformatics.

GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures

Florian Odronitz, Björn Hammesfahr, Martin Kollmar, 2013, BMC Bioinformatics.

WebScipio: reconstructing alternative splice variants of eukaryotic proteins

Klas Hatje, Björn Hammesfahr, Martin Kollmar, 2013, Nucleic Acids Res..

Peakr: simulating solid-state NMR spectra of proteins

Florian Odronitz, Björn Hammesfahr, Martin Kollmar, 2013, Bioinform..

Waggawagga: comparative visualization of coiled-coil predictions and detection of stable single α-helices (SAH domains)

Klas Hatje, Martin Kollmar, Dominic Simm, 2015, Bioinform..

Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches

Klas Hatje, Martin Kollmar, Burkhard Morgenstern, 2014, Nucleic Acids Res..

diArk – the database for eukaryotic genome and transcriptome assemblies in 2014

Björn Hammesfahr, Martin Kollmar, Dominic Simm, 2014, Nucleic Acids Res..

P3 WaggaWagga: a Web Service to Compare and Visualize Coiled-Coil Predictions, and to Assess the Oligomerisation State of Coiled-Coils

Klas Hatje, Martin Kollmar, Uwe Scholz, 2013 .

GenePainter v. 2.0 resolves the taxonomic distribution of intron positions

Martin Kollmar, Stefanie Mühlhausen, Marcel Hellkamp, 2015, Bioinform..

A novel hybrid gene prediction method employing protein multiple sequence alignments

Martin Kollmar, Mario Stanke, Stephan Waack, 2011, Bioinform..

ShereKhan - calculating exchange parameters in relaxation dispersion data from CPMG experiments

Björn Hammesfahr, Martin Kollmar, Donghan Lee, 2013, Bioinform..

Critical assessment of coiled-coil predictions based on protein structure data

Klas Hatje, Martin Kollmar, Stephan Waack, 2019, Scientific Reports.

Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species

Florian Odronitz, Martin Kollmar, Mario Stanke, 2008, BMC Bioinformatics.

Drawing the tree of eukaryotic life based on the analysis of 2,269 manually annotated myosins from 328 species

Florian Odronitz, Martin Kollmar, M. Kollmar, 2007, Genome Biology.

diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data

Florian Odronitz, Björn Hammesfahr, Martin Kollmar, 2011, BMC Research Notes.

Molecular Phylogeny of Sequenced Saccharomycetes Reveals Polyphyly of the Alternative Yeast Codon Usage

Martin Kollmar, Stefanie Mühlhausen, M. Kollmar, 2014, Genome biology and evolution.

diArk – a resource for eukaryotic genome research

Florian Odronitz, Martin Kollmar, Marcel Hellkamp, 2007, BMC Genomics.

Predicting Tandemly Arrayed Gene Duplicates with WebScipio

Klas Hatje, Martin Kollmar, K. Hatje, 2011 .

WebScipio: An online tool for the determination of gene structures using protein sequences

Holger Pillmann, Florian Odronitz, Martin Kollmar, 2008, BMC Genomics.

Waggawagga-CLI: A command-line tool for predicting stable single α-helices (SAH-domains), and the SAH-domain distribution across eukaryotes

Martin Kollmar, Dominic Simm, 2018, PloS one.

Nuclear codon reassignments in the genomics era and mechanisms behind their evolution.

Martin Kollmar, Stefanie Mühlhausen, M. Kollmar, 2017, BioEssays : news and reviews in molecular, cellular and developmental biology.

Predicting the fungal CUG codon translation with Bagheera

Martin Kollmar, Stefanie Mühlhausen, M. Kollmar, 2014, BMC Genomics.

Pfarao: a web application for protein family analysis customized for cytoskeletal and motor proteins (CyMoBase)

Florian Odronitz, Martin Kollmar, M. Kollmar, 2006, BMC Genomics.

Comparative genomic analysis of the arthropod muscle myosin heavy chain genes allows ancestral gene reconstruction and reveals a new type of 'partially' processed pseudogene

Florian Odronitz, Martin Kollmar, M. Kollmar, 2008, BMC Molecular Biology.

A novel nuclear genetic code alteration in yeasts and the evolution of codon reassignment in eukaryotes

Martin Kollmar, Stefanie Mühlhausen, Henning Urlaub, 2016, bioRxiv.