Douglas L. Brutlag

发表

Stochastic roadmap simulation for the study of ligand-protein interactions

Jean-Claude Latombe, Carlos Guestrin, Mehmet Serkan Apaydin, 2002, ECCB.

Regression Analysis of Multiple Protein Structures

Trevor J. Hastie, Douglas L. Brutlag, Thomas D. Wu, 1998, J. Comput. Biol..

Protein Structure Alignment: A Comparison of Methods

Amit Singh, Douglas L. Brutlag, D. Brutlag, 2000 .

Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, August 14-17, 1994, Stanford University, Stanford, California, USA

David B. Searls, Russ B. Altman, Peter D. Karp, 1994, Intelligent Systems in Molecular Biology.

Development and validation of a consistency based multiple structure alignment algorithm

Douglas L. Brutlag, Jessica Ebert, Jessica C. Ebert, 2006, Bioinform..

Using robotics to fold proteins and dock ligands

Jean-Claude Latombe, David Hsu, Carlos Guestrin, 2002, ECCB.

Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion

Jean-Claude Latombe, David Hsu, Carlos Guestrin, 2003, J. Comput. Biol..

MotifCut: regulatory motifs finding with maximum density subgraphs

Serafim Batzoglou, Douglas L. Brutlag, Eugene Fratkin, 2006, ISMB.

Computational Models For Protein Structure Analysis And Protein-Ligand Binding

Amit Singh, Douglas L. Brutlag, 2003 .

Regression analysis of multiple protein structures

Trevor J. Hastie, Douglas L. Brutlag, Thomas D. Wu, 1998, RECOMB '98.

Knowledge-based simulation of DNA metabolism: prediction of enzyme action

Douglas L. Brutlag, A. R. Galper, D. H. Millis, 1991, Comput. Appl. Biosci..

Detection of Correlations in tRNA Sequences with Structural Implications

Douglas L. Brutlag, Tod M. Klingler, D. Brutlag, 1993, ISMB.

On Near-Optimal Alignments of Biological Sequences

Dalit Naor, Douglas L. Brutlag, D. Brutlag, 1994, J. Comput. Biol..

eBLOCKs: enumerating conserved protein blocks to achieve maximal sensitivity and specificity

Lin Lu, Douglas L. Brutlag, Qiaojuan Jane Su, 2005, Nucleic Acids Res..

Computational Simulations of Biological Systems

Douglas L. Brutlag, Adam Galper, D. Brutlag, 1994 .

Homology Modeling of a Human Glycine Alpha 1 Receptor Reveals a Plausible Anesthetic Binding Site

Douglas L. Brutlag, James R. Trudell, Edward J. Bertaccini, 2005, J. Chem. Inf. Model..

The EMOTIF database

Douglas L. Brutlag, Jimmy Y. Huang, 2001, Nucleic Acids Res..

Development and Validation of a Consistency Based Multiple Structure Alignment Algorithm Running title: Consistency Based Multiple Alignment

Douglas L. Brutlag, Jessica C. Ebert, D. Brutlag, 2006 .

BioProspector: Discovering Conserved DNA Motifs in Upstream Regulatory Regions of Co-Expressed Genes

Douglas L. Brutlag, X. Liu, Jun S. Liu, 2000, Pacific Symposium on Biocomputing.

Bayesian Protein Structure Prediction

Douglas L. Brutlag, Jun S. Liu, Scott C. Schmidler, 2002 .

Bayesian Segmentation of Protein Secondary Structure

Douglas L. Brutlag, Jun S. Liu, Scott C. Schmidler, 2000, J. Comput. Biol..

Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion

Jean-Claude Latombe, David Hsu, Carlos Guestrin, 2002, RECOMB '02.

BLAZETM: An Implementation of the Smith-Waterman Sequence Comparison Algorithm on a Massively Parallel Computer

Douglas L. Brutlag, Bruce Moxon, Jeff Fier, 1993, Comput. Chem..

Rapid searches for complex patterns in biological molecules

Douglas L. Brutlag, David A. Jaffe, E. Mansfield, 1984, Nucleic Acids Res..

3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs

Lin Lu, Douglas L. Brutlag, Steven P. Bennett, 2003, Nucleic Acids Res..

Identification of Protein Motifs Using Conserved Amino Acid Properties and Partitioning Techniques

Douglas L. Brutlag, Thomas D. Wu, D. Brutlag, 1995, ISMB.

SEQ: a nucleotide sequence analysis and recombination system

Douglas L. Brutlag, Peter Friedland, J. Clayton, 1982, Nucleic Acids Res..

Enumerating and Ranking Discrete Motifs

Douglas L. Brutlag, Thomas D. Wu, Craig G. Nevill-Manning, 1997, ISMB.

FoldMiner and LOCK 2: protein structure comparison and motif discovery on the web

Douglas L. Brutlag, Jessica Shapiro, D. Brutlag, 2004, Nucleic Acids Res..

Statistical models and monte carlo methods for protein structure prediction

Douglas L. Brutlag, Scott C. Schmidler, D. Brutlag, 2002 .

Capturing molecular energy landscapes with probabilistic conformational roadmaps

Jean-Claude Latombe, Mehmet Serkan Apaydin, Douglas L. Brutlag, 2001, Proceedings 2001 ICRA. IEEE International Conference on Robotics and Automation (Cat. No.01CH37164).

Discovering Empirically Conserved Amino Acid Substitution Groups in Databases of Protein Families

Douglas L. Brutlag, Thomas D. Wu, D. Brutlag, 1996, ISMB.

Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology

Thomas Lengauer, Peer Bork, Douglas L. Brutlag, 1998, ISMB 1999.

GENESIS, a knowledge-based genetic engineering simulation system for representation of genetic data and experiment planning

Yumi Iwasaki, Douglas L. Brutlag, Peter Friedland, 1982, Nucleic Acids Res..

3MOTIF: visualizing conserved protein sequence motifs in the protein structure database

Douglas L. Brutlag, Craig G. Nevill-Manning, Steven P. Bennett, 2003, Bioinform..

Viewpoint: Directions for Clinical Research and Genomic Research into the Next Decade: Implications for Informatics

Douglas L. Brutlag, Thomas C. Rindfleisch, T. Rindfleisch, 1998, J. Am. Medical Informatics Assoc..

MAXAMIZE. A DNA sequencing strategy advisor

Douglas L. Brutlag, Peter Friedland, Laurence H. Kedes, 1982, Nucleic Acids Res..

Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation

Jean-Claude Latombe, David Hsu, Mehmet Serkan Apaydin, 2006, RECOMB.

Improved sensitivity of biological sequence database searches

Douglas L. Brutlag, Jean-Pierre Dautricourt, S. Maulik, 1990, Comput. Appl. Biosci..

Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values

Jean-Claude Latombe, David Hsu, Mehmet Serkan Apaydin, 2007, J. Comput. Biol..

Automatic construction of 3D structural motifs for protein function prediction

Russ B. Altman, Douglas L. Brutlag, Mike P. Liang, 2003, Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003.

Remote homology detection: a motif based approach

Douglas L. Brutlag, Asa Ben-Hur, A. Ben-Hur, 2003, ISMB.

A Motion Planning Approach to Flexible Ligand Binding

Jean-Claude Latombe, Douglas L. Brutlag, Amit Pal Singh, 1999, ISMB.

Sequence Motifs: Highly Predictive Features of Protein Function

Douglas L. Brutlag, Asa Ben-Hur, 2006, Feature Extraction.

Fast probabilistic analysis of sequence function using scoring matrices

Douglas L. Brutlag, Thomas D. Wu, Craig G. Nevill-Manning, 2000, Bioinform..

Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations

Douglas L. Brutlag, Amit Pal Singh, D. Brutlag, 1997, ISMB.

WebFEATURE: an interactive web tool for identifying and visualizing functional sites on macromolecular structures

Russ B. Altman, Teri E. Klein, Douglas L. Brutlag, 2003, Nucleic Acids Res..

Automated Construction of Structural Motifs for Predicting Functional Sites on Protein Structures

Russ B. Altman, Douglas L. Brutlag, Mike P. Liang, 2003, Pacific Symposium on Biocomputing.

Identifying Protein-Protein Interaction Sites on a Genome-Wide Scale

Haidong Wang, Daphne Koller, Eran Segal, 2004, NIPS.

Stochastic Conformational Roadmaps for Computing Ensemble Properties of Molecular Motion

Jean-Claude Latombe, David Hsu, Carlos Guestrin, 2002, WAFR.

Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany

Thomas Lengauer, Reinhard Schneider, Peer Bork, 1999, Intelligent Systems in Molecular Biology.

Minimal-Risk Scoring Matrices for Sequence Analysis

Douglas L. Brutlag, Thomas D. Wu, Craig G. Nevill-Manning, 1999, J. Comput. Biol..

A suite of web-based programs to search for transcriptional regulatory motifs

Serafim Batzoglou, Douglas L. Brutlag, Xiaole Shirley Liu, 2004, Nucleic Acids Res..

Discovering Side-Chain Correlations In alpha-Helices

Douglas L. Brutlag, Tod M. Klingler, D. Brutlag, 1994, ISMB.

On Suboptimal Alignments of Biological Sequences

Dalit Naor, Douglas L. Brutlag, D. Brutlag, 1993, CPM.

Bioinformatics (Dagstuhl Seminar 00491)

Martin Vingron, Thomas Lengauer, Douglas L. Brutlag, 2000 .

Knowledge-based simulation of DNA metabolism: Prediction of action and envisionment of pathways

Douglas L. Brutlag, D. H. Millis, Adam Galper, 1993 .

Finding Regulatory Motifs with Maximum Density Subgraphs

Serafim Batzoglou, Douglas L. Brutlag, Eugene Fratkin, 2006 .