Ashlee M Earl

ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database

João L Reis-Cunha, Daniella C Bartholomeu, Abigail L Manson, 2019, PloS one.

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

Katherine H. Huang, Jonathan Livny, Jacques Izard, 2012, Genome Biology.

Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance

Thomas Abeel, Abigail L Manson, Ashlee M Earl, 2016, Nature Genetics.

Analysis of Deinococcus radiodurans's Transcriptional Response to Ionizing Radiation and Desiccation Reveals Novel Proteins That Contribute to Extreme Radioresistance

Scott N Peterson, Jonathan A Eisen, Ashlee M Earl, 2004, Genetics.

Ecology and genomics of Bacillus subtilis.

Ashlee M Earl, Roberto Kolter, R. Losick, 2008, Trends in microbiology.