Benjamin T. Miller

发表

Open Science Grid Study of the Coupling between Conformation and Water Content in the Interior of a Protein

Bernard R. Brooks, Ana Damjanovic, Benjamin T. Miller, 2008, J. Chem. Inf. Model..

Development and implementation of (Q)SAR modeling within the CHARMMing web‐user interface

Igor V. Filippov, Bernard R. Brooks, Benjamin T. Miller, 2015, J. Comput. Chem..

Web-Based Computational Chemistry Education with CHARMMing II: Coarse-Grained Protein Folding

Bernard R. Brooks, Benjamin T. Miller, H. Lee Woodcock, 2014, PLoS Comput. Biol..

Normal mode analysis with reduced Hessians for multi-scale modeling techniques

Michel Waroquier, Bernard R. Brooks, Benjamin T. Miller, 2011 .

Comparing normal modes across different models and scales: Hessian reduction versus coarse‐graining

Bernard R. Brooks, Benjamin T. Miller, IV FrankC.Pickard, 2012, J. Comput. Chem..

Web-Based Computational Chemistry Education with CHARMMing I: Lessons and Tutorial

Bernard R. Brooks, Benjamin T. Miller, Yuri Pevzner, 2014, PLoS Comput. Biol..

CHARMMing: A New, Flexible Web Portal for CHARMM

Bernard R. Brooks, Benjamin T. Miller, H. Lee Woodcock, 2008, J. Chem. Inf. Model..

ProBiS-CHARMMing: Web Interface for Prediction and Optimization of Ligands in Protein Binding Sites

Dusanka Janezic, Bernard R. Brooks, Benjamin T. Miller, 2015, J. Chem. Inf. Model..

Web-Based Computational Chemistry Education with CHARMMing III: Reduction Potentials of Electron Transfer Proteins

Bernard R. Brooks, Benjamin T. Miller, H. Lee Woodcock, 2014, PLoS Comput. Biol..

The distributed diagonal force decomposition method for parallelizing molecular dynamics simulations

Dusanka Janezic, Bernard R. Brooks, Benjamin T. Miller, 2011, J. Comput. Chem..

Hydrophobic hydration and the anomalous partial molar volumes in ethanol-water mixtures.

Benjamin T. Miller, B. Brooks, T. Ichiye, 2015, The Journal of chemical physics.

A parallel implementation of the analytic nuclear gradient for time-dependent density functional theory within the Tamm–Dancoff approximation

Benjamin T. Miller, M. Head‐Gordon, B. Brooks, 1999 .

Understanding the basis of a class of paradoxical mutations in AraC through simulations

Benjamin T. Miller, A. Damjanovic, R. Schleif, 2013, Proteins.

MSCALE: A General Utility for Multiscale Modeling.

Asim Okur, Bernard R Brooks, Benjamin T. Miller, 2011, Journal of chemical theory and computation.

Enhancing constant-pH simulation in explicit solvent with a two-dimensional replica exchange method.

Bernard R Brooks, Benjamin T. Miller, Benjamin T Miller, 2015, Journal of chemical theory and computation.

Reservoir pH replica exchange.

Benjamin T. Miller, B. Brooks, Asim Okur, 2018, The Journal of chemical physics.

Computational scheme for pH‐dependent binding free energy calculation with explicit solvent

Bernard R Brooks, Benjamin T. Miller, Benjamin T Miller, 2015, Protein science : a publication of the Protein Society.

Constant pH Molecular Dynamics in Explicit Solvent with Enveloping Distribution Sampling and Hamiltonian Exchange

Benjamin T. Miller, B. Brooks, Juyong Lee, 2014, Journal of chemical theory and computation.

Generating reservoir conformations for replica exchange through the use of the conformational space annealing method.

Keehyoung Joo, Jooyoung Lee, Asim Okur, 2013, Journal of chemical theory and computation.

Enhanced Sampling in Free Energy Calculations: Combining SGLD with the Bennett's Acceptance Ratio and Enveloping Distribution Sampling Methods.

Bernard R Brooks, Xiongwu Wu, Benjamin T. Miller, 2012, Journal of chemical theory and computation.

Computation of Hydration Free Energies Using the Multiple Environment Single System Quantum Mechanical/Molecular Mechanical Method.

Andrew C Simmonett, Bernard R Brooks, Ye Mei, 2016, Journal of chemical theory and computation.

Langevin network model of myosin.

Bernard R Brooks, Benjamin T. Miller, Benjamin T Miller, 2008, The journal of physical chemistry. B.

Efficient Calculation of QM/MM Frequencies with the Mobile Block Hessian.

Michel Waroquier, Veronique Van Speybroeck, Bernard R Brooks, 2011, Journal of chemical theory and computation.

Web-Based Computational Chemistry Education with CHARMMing II: Coarse-Grained Protein Folding

Benjamin T. Miller, Frank C. Pickard, Vinushka Schalk, 2014, PLoS Comput. Biol..

Web-Based Computational Chemistry Education with CHARMMing I: Lessons and Tutorial

Benjamin T. Miller, Rishi P. Singh, B. Brooks, 2014, PLoS Comput. Biol..

Web-Based Computational Chemistry Education with CHARMMing III: Reduction Potentials of Electron Transfer Proteins

Benjamin T. Miller, T. Ichiye, Vinushka Schalk, 2014, PLoS Comput. Biol..

A parallel implementation of the analytic nuclear gradient for time-dependent density functional theory within the Tamm–Dancoff approximation

Benjamin T. Miller, M. Head‐Gordon, B. Brooks, 2010 .