Jeremiah D. Degenhardt

发表

Genomic variant calling: Flexible tools and a diagnostic data set

Robert Gentleman, Melanie A. Huntley, Somasekar Seshagiri, 2015, bioRxiv.

Comparative and demographic analysis of orang-utan genomes

Albert J. Vilella, Zhengyuan O. Wang, Matthew W. Hahn, 2011, Nature.

Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome

Ryan D. Hernandez, Jeremiah D. Degenhardt, Amit R. Indap, 2008, PLoS genetics.

Global distribution of genomic diversity underscores rich complex history of continental human populations.

John Novembre, Ryan N Gutenkunst, Katarzyna Bryc, 2009, Genome research.

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

David N. Messina, Ryan D. Hernandez, Jeffery P. Demuth, 2007, Science.

A Simple Genetic Architecture Underlies Morphological Variation in Dogs

Jeremiah D. Degenhardt, A. Auton, J. Novembre, 2010, PLoS biology.

PCAdmix: Principal Components-Based Assignment of Ancestry Along Each Chromosome in Individuals with Admixed Ancestry from Two or More Populations

Jake K. Byrnes, Jeremiah D. Degenhardt, H. Ostrer, 2012, Human biology.

Recurrent R-spondin fusions in colon cancer

Melanie A. Huntley, Thomas D. Wu, Jeremiah D. Degenhardt, 2012, Nature.

A comprehensive transcriptional portrait of human cancer cell lines

Thomas D. Wu, Gregory J. Zynda, Jeremiah D. Degenhardt, 2014, Nature Biotechnology.

Population genetic inference from personal genome data: impact of ancestry and admixture on human genomic variation.

Rong Chen, Francisco M. De La Vega, Larsson Omberg, 2012, American journal of human genetics.

Consortium, G.P A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073

Ken Chen, Joshua M. Korn, Afidalina Tumian, 2010 .

MMP-9 inhibition promotes anti-tumor immunity through disruption of biochemical and physical barriers to T-cell trafficking to tumors

Jeremiah D. Degenhardt, I. Mikaelian, Peng Yue, 2018, PloS one.

Regression of EGFR positive established solid tumors in mice with the conditionally active T cell engager TAK-186

Jeremiah D. Degenhardt, Danielle E. Dettling, R. Dubridge, 2022, Journal for ImmunoTherapy of Cancer.

Higher ratio immune versus constitutive proteasome level as novel indicator of sensitivity of pediatric acute leukemia cells to proteasome inhibitors

Jeremiah D. Degenhardt, Y. Assaraf, A. Schimmer, 2013, Haematologica.

Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication

Jeremiah D. Degenhardt, A. Auton, J. Novembre, 2010, Nature.

T-cell engaging bispecific antibody therapy

Jeremiah D. Degenhardt, Danielle E. Dettling, C. May, 2022 .

An integrated map of genetic variation from 1,092 human genomes

Kenny Q. Ye, Mauricio O. Carneiro, Francisco M. De La Vega, 2012, Nature.

Population Genomic Analysis Reveals a Rich Speciation and Demographic History of Orang-utans (Pongo pygmaeus and Pongo abelii)

André L. Martins, Jeremiah D. Degenhardt, Joanna L. Kelley, 2013, PloS one.

Targets of balancing selection in the human genome.

Jeremiah D. Degenhardt, Amit R. Indap, A. Clark, 2009, Molecular biology and evolution.

Copy Number Variation of CCL3-like Genes Affects Rate of Progression to Simian-AIDS in Rhesus Macaques (Macaca mulatta)

Jeremiah D. Degenhardt, Adrien E. Chabot, E. Eichler, 2009, PLoS genetics.

Copy Number Variation of CCL 3-like Genes Affects Rate of Progression to Simian-AIDS in Rhesus Macaques ( Macaca mulatta )

Jeremiah D. Degenhardt, Adrien E. Chabot, E. Eichler, 2009 .

Supplemental Section S1 – Genome Sequencing and Assembly........................................... 2 Supplemental Section S2 – Indel Assessment with the Neutral Indel Model ................11 Supplemental Section S3 – Great Ape Divergence Estimate via Wgs Read Mapping..11 Supplemental Section S7 –

Albert J. Vilella, Zhengyuan O. Wang, Miriam K. Konkel, 2022 .

Sex-averaged recombination and mutation rates on the X chromosome: a comment on Labuda et al.

Jeremiah D. Degenhardt, A. Keinan, K. Lohmueller, 2010, American journal of human genetics.

Testing nested phylogenetic and phylogeographic hypotheses in the Plethodon vandykei species group.

Jeremiah D. Degenhardt, Bryan C. Carstens, J. Sullivan, 2004, Systematic biology.

Secondary resistance to idelalisib is characterized by upregulation of IGF1R rather than MAPK/ERK pathway mutations.

Jeremiah D. Degenhardt, R. Rosenquist, S. Stilgenbauer, 2022, Blood.

Whole-Exome Sequencing Revealed No Recurrent Mutations within the PI3K Pathway in Relapsed Chronic Lymphocytic Leukemia Patients Progressing Under Idelalisib Treatment

Jeremiah D. Degenhardt, R. Rosenquist, S. Stilgenbauer, 2016 .

COBRA™: a highly potent conditionally active T cell engager engineered for the treatment of solid tumors

Jeremiah D. Degenhardt, Danielle E. Dettling, R. Dubridge, 2020, mAbs.

history of continental human populations Global distribution of genomic diversity underscores rich complex Material Supplemental

Jeremiah D. Degenhardt, Mark H. Wright, Amit R. Indap, 2009 .

Complex population structure in African village dogs and its implications for inferring dog domestication history

Jeremiah D. Degenhardt, Ryan H. Boyko, A. Auton, 2009, Proceedings of the National Academy of Sciences.

Global distribution of genomic diversity underscores rich complex history of continental human populations.

Jeremiah D. Degenhardt, Mark H. Wright, Amit R. Indap, 2009, Genome research.

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

David N. Messina, Matthew W. Hahn, Miriam K. Konkel, 2007 .