Tobin R. Sosnick

发表

Simplified protein models: predicting folding pathways and structure using amino acid sequences.

Aashish N. Adhikari, Karl F. Freed, Tobin R. Sosnick, 2013, Physical review letters.

A Probabilistic Graphical Model for Ab Initio Folding

Feng Zhao, Jian Peng, Jinbo Xu, 2009, RECOMB.

Faculty Opinions recommendation of A unified mechanism for protein folding: predetermined pathways with optional errors.

Tobin R. Sosnick, 2007 .

A Probabilistic and Continuous Model of Protein Conformational Space for Template-Free Modeling

Feng Zhao, Jian Peng, Jinbo Xu, 2010, J. Comput. Biol..

Erratum: Random-coil behavior and the dimensions of chemically unfolded proteins (Proceedings of The National Academy of Sciences of The United States of America (August 24, 2004) 101, 34 (12491-12496))

Vijay S. Pande, Ingo Ruczinski, Kevin W. Plaxco, 2005 .

Rationally improving LOV domain–based photoswitches

Xiaolan Yao, Tobin R. Sosnick, Kevin H. Gardner, 2010, Nature Methods.

Trajectory-Based Parameterization of a Coarse-Grained Forcefield for High-Thoughput Protein Simulation

Karl F. Freed, Tobin R. Sosnick, John M. Jumper, 2017, bioRxiv.

The burst phase in ribonuclease A folding and solvent dependence of the unfolded state

Tobin R. Sosnick, S. Walter Englander, T. Sosnick, 1998, Nature Structural Biology.

TULIPs: Tunable, light-controlled interacting protein tags for cell biology

Josiah P. Zayner, Tobin R. Sosnick, Eric L. Weiss, 2012, Nature Methods.

The Role a-Helical of Helix Formation in the Folding of a Fully Coiled Coil

Tobin R. Sosnick, William F. DeGrado, S. Walter Englander, 1996 .

Rapid calculation of side chain packing and free energy with applications to protein molecular dynamics

Karl F. Freed, Tobin R. Sosnick, John M. Jumper, 2016 .

D/H amide kinetic isotope effects reveal when hydrogen bonds form during protein folding

Alex Kentsis, Tobin R. Sosnick, A. Kentsis, 2000, Nature Structural Biology.

Characterizing the Protein Folding Transition State Using ψ Analysis

Tobin R. Sosnick, Robin S. Dothager, Michael C. Baxa, 2006 .

Fast and Slow Folding in Cytochrome c

Yawen Bai, Leland Mayne, Tobin R. Sosnick, 1998 .

Temperature dependence of reactions with multiple pathways

Muhammad H. Zaman, R. Stephen Berry, Tobin R. Sosnick, 2003 .

Benchmarking all-atom simulations using hydrogen exchange

Wookyung Yu, Karl F. Freed, Tobin R. Sosnick, 2014, Proceedings of the National Academy of Sciences.

Even with nonnative interactions, the updated folding transition states of the homologs Proteins G & L are extensive and similar

Ruhong Zhou, Wookyung Yu, Karl F. Freed, 2015, Proceedings of the National Academy of Sciences.

The role of helix formation in the folding of a fully α‐helical coiled coil

Tobin R. Sosnick, William F. DeGrado, S. Walter Englander, 1996 .

Including H-Bonding in Depth-Dependent Membrane Burial Potentials for Improving Folding Simulations

Karl F. Freed, Tobin R. Sosnick, Zongan Wang, 2016 .

On Docking, Scoring and Assessing Protein-DNA Complexes in a Rigid-Body Framework

Karl F. Freed, Tobin R. Sosnick, Marc Parisien, 2012, PloS one.