Akinori Sarai

发表

Visualization of Functional Sites on Protein Structures by Virtual Reality Modeling Language

Jianghong An, Yasushi Kubota, Takao Nakama, 1997 .

Molecular dynamics study on mobility and dipole ordering of solvent around proteins: effects of periodic-box size and protein charge

Haruki Nakamura, Junichi Higo, Hiroki Shirai, 1999 .

PrognoScan: a new database for meta-analysis of the prognostic value of genes

Kenta Nakai, Hideaki Mizuno, Akinori Sarai, 2009, BMC Medical Genomics.

Free energy calculations for the relative binding affinity between DNA and λ‐repressor

Akinori Sarai, Minoru Saito, A. Sarai, 2003 .

Look‐up tables for protein solvent accessibility prediction and nearest neighbor effect analysis

Jung-Ying Wang, M Michael Gromiha, Akinori Sarai, 2004, Biopolymers.

Elastic properties of the poly-l-glycine α-helix from periodic SCF-LMO calculations

Fabio Pichierri, Akinori Sarai, A. Sarai, 2000 .

Classification of protein-DNA complexes based on structural descriptors.

Ponraj Prabakaran, M Michael Gromiha, Akinori Sarai, 2006, Structure.

Moment-based prediction of DNA-binding proteins.

Akinori Sarai, A. Sarai, Shandar Ahmad, 2004, Journal of molecular biology.

Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks

Kenji Mizuguchi, Akinori Sarai, K. Mizuguchi, 2009, BMC Structural Biology.

Role of inter and intramolecular interactions in protein-DNA recognition.

Samuel Selvaraj, M Michael Gromiha, Hidetoshi Kono, 2005, Gene.

Sequence-dependent DNA deformability studied using molecular dynamics simulations

Satoshi Fujii, Hidetoshi Kono, Akinori Sarai, 2007, Nucleic acids research.

Genetic Algorithm Optimization in Drug Design QSAR: Bayesian‐Regularized Genetic Neural Networks (BRGNN) and Genetic Algorithm‐Optimized Support Vectors Machines (GA‐SVM)

Julio Caballero, Michael Fernández, Leyden Fernández, 2011 .

Target Prediction of Transcription Factors: Refinement of Structure-Based Method

M. Michael Gromiha, Samuel Selvaraj, Ponraj Prabakaran, 2001 .

ProTherm: Thermodynamic Database for Proteins and Mutants

M. Michael Gromiha, Jianghong An, Hidetoshi Kono, 1998 .

A generalized conformational energy function of DNA derived from molecular dynamics simulations

Kentaro Shimizu, Tohru Terada, Satoshi Yamasaki, 2009, Nucleic acids research.

Identification of genes upregulated in ALK-positive and EGFR/KRAS/ALK-negative lung adenocarcinomas.

Satoru Miyano, Rui Yamaguchi, Seiichiro Yamamoto, 2012, Cancer research.

Anatomy of specific interactions between lambda repressor and operator DNA.

Hidetoshi Kono, Akinori Sarai, Motohisa Oobatake, 2003, Proteins.

Intermolecular and intramolecular readout mechanisms in protein-DNA recognition.

Samuel Selvaraj, Hidetoshi Kono, Akinori Sarai, 2004, Journal of molecular biology.

Thermodynamic Database for Protein-Nucleic Acid Interactions

M. Michael Gromiha, Jianghong An, Samuel Selvaraj, 1999 .

A new method for evaluating the specificity of indirect readout in protein–DNA recognition

Kentaro Shimizu, Tohru Terada, Satoshi Yamasaki, 2012, Nucleic acids research.

Prediction of DNA-binding sites in proteins using evolutionary profiles

Akinori Sarai, Shandar Ahmad, 2004 .

Cavity-Filling Mutations Enhance Protein Stability by Lowering the Free Energy of Native State

Hidetoshi Kono, Tahir H. Tahirov, Kazuhiro Ogata, 2000 .

Anatomy of specific interactions between λ repressor and operator DNA

Hidetoshi Kono, Akinori Sarai, Motohisa Oobatake, 2003 .

The role of alternative translation start sites in the generation of human protein diversity

Nikolay A. Kolchanov, Igor B. Rogozin, Alex V. Kochetov, 2005, Molecular Genetics and Genomics.

3DinSight: An Integrated Database and Search Tool for Structure, Function and Property of Biomolecules

Akinori Sarai, Jianghoong An, 1999 .

1P207 Classification of Protein-DNA Complexes Based on Structural Descriptors(7. Nucleic acid binding protein,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

M. Michael Gromiha, Ponraj Prabakaran, Akinori Sarai, 2006 .

Indirect readout in drug-DNA recognition: role of sequence-dependent DNA conformation

Marcos J. Araúzo-Bravo, Akinori Sarai, M. Araúzo-Bravo, 2007, Nucleic acids research.

Free-Energy Maps of Base−Amino Acid Interactions for DNA−Protein Recognition

M. Michael Gromiha, Misako Aida, Fabio Pichierri, 1999 .

Importance of mutant position in Ramachandran plot for predicting protein stability of surface mutations.

M Michael Gromiha, Hidetoshi Kono, Akinori Sarai, 2002, Biopolymers.

Protein–DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins

Ozlem Keskin, Ruth Nussinov, Akinori Sarai, 2008, Nucleic acids research.

Multicanonical Monte Carlo calculation of the free‐energy map of the base–amino acid interaction

M. Michael Gromiha, Hidetoshi Kono, Akinori Sarai, 2000 .

Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices

Haruki Nakamura, Kazuhiro Ogata, Akinori Sarai, 1994, Cell.

Sequence Dependence of DNA Conformations: Means and Fluctuations

Ruth Nussinov, Robert L. Jernigan, Akinori Sarai, 1988 .

A signature-based method for indexing cell cycle phase distribution from microarray profiles

Hideaki Mizuno, Yoshito Nakanishi, Akinori Sarai, 2009, BMC Genomics.

Recent Developments in ProNIT: Thermodynamic Database for Protein-Nucleic Acid Interactions

M. Michael Gromiha, Jianghong An, Samuel Selvaraj, 2001 .

Knowledge-based prediction of DNA atomic structure from nucleic sequence.

Marcos J Araúzo-Bravo, Akinori Sarai, M. Araúzo-Bravo, 2005, Genome informatics. International Conference on Genome Informatics.

Atom-wise statistics and prediction of solvent accessibility in proteins.

M Michael Gromiha, Akinori Sarai, M. Gromiha, 2006, Biophysical chemistry.