Shahin Mohammadi

Kavosh: a new algorithm for finding network motifs

Sahar Asadi, Ali Masoudi-Nejad, Falk Schreiber, 2009, BMC Bioinformatics.

A parallel algorithm for generation of RNA secondary structures with length n and k base-pairs

Abbas Nowzari-Dalini, Shahin Mohammadi, 2018 .

A multiresolution framework to characterize single-cell state landscapes

Jose Davila-Velderrain, Manolis Kellis, Shahin Mohammadi, 2019, Nature Communications.

Multi-resolution single-cell state characterization via joint archetypal/network analysis

Jose Davila-Velderrain, Manolis Kellis, Shahin Mohammadi, 2019 .