Elhanan Borenstein

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NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species

Adi Doron-Faigenboim, Anat Kreimer, Elhanan Borenstein, 2012, Bioinform..

Microbial community design: methods, applications, and opportunities.

Elhanan Borenstein, Alexander Eng, E. Borenstein, 2019, Current opinion in biotechnology.

NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation

Anat Kreimer, Elhanan Borenstein, Shiri Freilich, 2015, BMC Bioinformatics.

Computational systems biology and in silico modeling of the human microbiome

Elhanan Borenstein, E. Borenstein, Elhanan Borenstein, 2012, Briefings Bioinform..

Linking information to a video and access to information from a video.

Elhanan Borenstein, Avner Peleg, Eliahu Efrat, 1997 .

An algorithm for designing minimal microbial communities with desired metabolic capacities

Elhanan Borenstein, Alexander Eng, E. Borenstein, 2016, Bioinform..

An End to Endless Forms: Epistasis, Phenotype Distribution Bias, and Nonuniform Evolution

Elhanan Borenstein, David C. Krakauer, E. Borenstein, 2008, PLoS Comput. Biol..

PLOS Computational Biology 2016 Reviewer and Editorial Board Thank You

Matthias Bethge, Gunnar Blohm, Kevin Bretonnel Cohen, 2017, PLoS Comput. Biol..

Reverse Ecology: from systems to environments and back.

Elhanan Borenstein, Roie Levy, E. Borenstein, 2012, Advances in experimental medicine and biology.

Topological Signatures of Species Interactions in Metabolic Networks

Elhanan Borenstein, Marcus W. Feldman, M. Feldman, 2009, J. Comput. Biol..

Evolution, Learning and Imitation in Autonomous Agents

Elhanan Borenstein, E. Borenstein, 2003 .

Faculty Opinions recommendation of Machine learning reveals missing edges and putative interaction mechanisms in microbial ecosystem networks.

Elhanan Borenstein, Efrat Muller, 2019 .

Sequence hypervideo et hypervideo dynamique

Elhanan Borenstein, Eliahu Efrat, Ehud Peleg, 1998 .

Enhancing Autonomous Agents Evolution with Learning by Imitation

Eytan Ruppin, Elhanan Borenstein, E. Borenstein, 2003 .

NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species

Adi Doron-Faigenboim, Anat Kreimer, Elhanan Borenstein, 2012, Bioinform..

NetSeed: a network-based reverse-ecology tool for calculating the metabolic interface of an organism with its environment

Elhanan Borenstein, Rogan Carr, E. Borenstein, 2012, Bioinform..

MetaLAFFA: a flexible, end-to-end, distributed computing-compatible metagenomic functional annotation pipeline

Elhanan Borenstein, Alexander Eng, Adrian J. Verster, 2020, BMC Bioinformatics.

Reconstructing the Genomic Content of Microbiome Taxa through Shotgun Metagenomic Deconvolution

Elhanan Borenstein, Rogan Carr, Shai S. Shen-Orr, 2013, PLoS Comput. Biol..

Emergent Biosynthetic Capacity in Simple Microbial Communities

Elhanan Borenstein, Roie Levy, Hsuan-Chao Chiu, 2014, PLoS Comput. Biol..

BURRITO: An Interactive Multi-Omic Tool for Visualizing Taxa–Function Relationships in Microbiome Data

Elhanan Borenstein, Alexander Eng, Colin P. McNally, 2018, Front. Microbiol..

Metabolic model-based analysis of the emergence of bacterial cross-feeding via extensive gene loss

Elhanan Borenstein, Colin P. McNally, E. Borenstein, 2018, BMC Syst. Biol..

Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species

Roded Sharan, Eytan Ruppin, Anat Kreimer, 2010, PLoS Comput. Biol..

The evolution of imitation and mirror neurons in adaptive agents

Eytan Ruppin, Elhanan Borenstein, E. Borenstein, 2005, Cognitive Systems Research.

Conservation of trans-acting circuitry during mammalian regulatory evolution

Elhanan Borenstein, R. Scott Hansen, Peter J. Sabo, 2014, Nature.

Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes

Roded Sharan, Eytan Ruppin, Elhanan Borenstein, 2006, Nucleic acids research.

Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation

Casey M. Theriot, Elhanan Borenstein, Alexander Eng, 2016, mSystems.

Rong Chen, Elhanan Borenstein, Dmitri A. Petrov, 2009, Genome biology and evolution.

Revised computational metagenomic processing uncovers hidden and biologically meaningful functional variation in the human microbiome

Elhanan Borenstein, Ohad Manor, Ohad Manor, 2017, Microbiome.

Metagenomic systems biology and metabolic modeling of the human microbiome

Elhanan Borenstein, Roie Levy, E. Borenstein, 2014, Gut microbes.

Broker Genes in Human Disease

Elhanan Borenstein, Dmitri A. Petrov, James J. Cai, 2010, Genome biology and evolution.

An Alignment-Free "Metapeptide" Strategy for Metaproteomic Characterization of Microbiome Samples Using Shotgun Metagenomic Sequencing.

William Stafford Noble, Elhanan Borenstein, William S Noble, 2016, Journal of proteome research.

Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice

Young-Mo Kim, Elhanan Borenstein, Lisa M. Bramer, 2019, Cell.

Most Networks in Wagner's Model Are Cycling

Elhanan Borenstein, Marcus W. Feldman, M. Feldman, 2012, PloS one.

Comparative Analysis of Functional Metagenomic Annotation and the Mappability of Short Reads

Elhanan Borenstein, Rogan Carr, E. Borenstein, 2014, PloS one.

Where Next for Microbiome Research?

Elhanan Borenstein, Howard Ochman, Jeffrey I. Gordon, 2015, PLoS biology.

Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles

Elhanan Borenstein, Alexander Eng, Samuel I. Miller, 2019, Cell reports.

Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species

Elhanan Borenstein, Rogan Carr, Sharon Greenblum, 2015, Cell.

Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome

Young-Mo Kim, Elhanan Borenstein, Thomas O Metz, 2016, Nature Microbiology.

MUSiCC: a marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome

Elhanan Borenstein, Ohad Manor, E. Borenstein, 2014, bioRxiv.

Systematic Characterization and Analysis of the Taxonomic Drivers of Functional Shifts in the Human Microbiome.

Elhanan Borenstein, Ohad Manor, E. Borenstein, 2017, Cell host & microbe.

High‐resolution characterization of the human microbiome

Elhanan Borenstein, Alexander Eng, Cecilia Noecker, 2017, Translational research : the journal of laboratory and clinical medicine.

EVOLUTION OF LEARNING IN FLUCTUATING ENVIRONMENTS: WHEN SELECTION FAVORS BOTH SOCIAL AND EXPLORATORY INDIVIDUAL LEARNING

Elhanan Borenstein, Kenichi Aoki, Marcus W Feldman, 2008, Evolution; international journal of organic evolution.

The discovery of integrated gene networks for autism and related disorders

Elhanan Borenstein, Fereydoun Hormozdiari, Evan E Eichler, 2015, Genome research.

Towards a predictive systems-level model of the human microbiome: progress, challenges, and opportunities.

Elhanan Borenstein, Rogan Carr, Roie Levy, 2013, Current opinion in biotechnology.