Rob Knight

发表

A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system

Yan Guo, Rob Knight, Jessica L. Metcalf, 2013, eLife.

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers

Christian L. Lauber, Donna Berg-Lyons, Noah Fierer, 2011, Bioinform..

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Francesco Asnicar, Mingxun Wang, Yang Bai, 2019, Nature Biotechnology.

The founding charter of the Genomic Observatories Network

Renzo Kottmann, Frank Oliver Glöckner, Norman Morrison, 2014, GigaScience.

Porting and optimizing UniFrac for GPUs: Reducing microbiome analysis runtimes by orders of magnitude

Rob Knight, Daniel McDonald, Igor Sfiligoi, 2020, PEARC.

SHOGUN: a modular, accurate and scalable framework for microbiome quantification

Dan Knights, Rob Knight, Qiyun Zhu, 2020, Bioinform..

Species abundance information improves sequence taxonomy classification accuracy

Rob Knight, Gavin A. Huttley, J. Gregory Caporaso, 2019 .

A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity

Rob Knight, Lu Liu, Gongchao Jing, 2020, bioRxiv.

QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data

Rob Knight, Qiyun Zhu, Evan Bolyen, 2020, Current protocols in bioinformatics.

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Francesco Asnicar, Mingxun Wang, Yang Bai, 2019, Nature Biotechnology.

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Francesco Asnicar, Mingxun Wang, Pieter C. Dorrestein, 2018 .

EMPress enables tree-guided, interactive, and exploratory analyses of multi-omic datasets

Anna Paola Carrieri, Pieter C. Dorrestein, Rob Knight, 2020, bioRxiv.

Visualizing ’omic feature rankings and log-ratios using Qurro

Rob Knight, Antonio González, Cameron Martino, 2020, NAR genomics and bioinformatics.

Open-Source Sequence Clustering Methods Improve the State Of the Art

Rob Knight, J. Gregory Caporaso, Frédéric Mahé, 2016, mSystems.

Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data

Wout Bittremieux, Zheng Zhang, Yann Guitton, 2020, Nature Biotechnology.

Leveling up citizen science

Rob Knight, Attila Szantner, Jérôme Waldispühl, 2020, Nature Biotechnology.

Qiita: rapid, web-enabled microbiome meta-analysis

Mingxun Wang, Rob Knight, Evan Bolyen, 2018, Nature Methods.

Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

Justin J. J. van der Hooft, Mingxun Wang, Pieter C. Dorrestein, 2020, Nature Chemical Biology.

MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities.

Hosein Mohimani, Rob Knight, Pavel A Pevzner, 2019, Cell systems.

GPU-Powered Control of a Compliant Humanoid Robot

Rob Knight, Alan Diamond, Steffen Wittmeier, 2010 .

Microbiome analyses of blood and tissues suggest cancer diagnostic approach

Rob Knight, Qiyun Zhu, Stefan Janssen, 2020, Nature.

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

Kristian Fog Nielsen, Paul Shinn, Dac-Trung Nguyen, 2016, Nature Biotechnology.

Chemically-informed Analyses of Metabolomics Mass Spectrometry Data with Qemistree

Justin J.J. van der Hooft, Jo Handelsman, Mingxun Wang, 2020, bioRxiv.

Ultra-low input single tube linked-read library method enables short-read NGS systems to generate highly accurate and economical long-range sequencing information for de novo genome assembly and haplotype phasing

Yong Wang, Yu Xia, Rob Knight, 2019, bioRxiv.

Mass spectrometry searches using MASST

Justin J. J. van der Hooft, Alexander A. Aksenov, Nuno Bandeira, 2020, Nature Biotechnology.

ReDU: a framework to find and reanalyze public mass spectrometry data

Justin J. J. van der Hooft, Ngoc Hung Nguyen, Nuno Bandeira, 2020, Nature Methods.

Towards anthropomimetic robotics: Development, simulation, and control of a musculoskeletal torso

Alois Knoll, Veljko Potkonjak, Rob Knight, 2013 .

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information

Rob Knight, Siavash Mirarab, Antonio Gonzalez, 2018, mSystems.

Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data

Ngoc Hung Nguyen, Nuno Bandeira, Kelly Weldon, 2019, bioRxiv.

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

Antonio Gonzalez, Jack A. Gilbert, Yan He, 2014, PeerJ.

Creating a 3D microbial and chemical snapshot of a human habitat

Larry Smarr, Rob Knight, Qiyun Zhu, 2018, Scientific Reports.

Walking Robots — A Survey and a Research Proposal

Rob Knight, Ulrich Nehmzow, 2002 .

Two Simulation Tools for Biologically Inspired Virtual Robotics

Rob Knight, Owen Holland, Richard A. Newcombe, 2006 .