Robert Küffner

发表

ProSAS: a database for analyzing alternative splicing in the context of protein structures

Franziska Meier, Ralf Zimmer, Fabian Birzele, 2007, Nucleic Acids Res..

Detection of network motifs using three-way ANOVA

Ralf Zimmer, Robert Küffner, Pegah Tavakkolkhah, 2018, PloS one.

Experiment Specific Expression Patterns

Ralf Zimmer, Robert Küffner, Tobias Petri, 2011, RECOMB.

Extending Partially Known Networks

Robert Küffner, Pegah Tavakkolkhah, R. Küffner, 2013 .

Reliable gene signatures for microarray classification: assessment of stability and performance

Caroline C. Friedel, Ralf Zimmer, Robert Küffner, 2006, Bioinform..

Inferring gene regulatory networks by ANOVA

Ralf Zimmer, Robert Küffner, Pegah Tavakkolkhah, 2012, Bioinform..

Characterization of Protein Interactions

Ralf Zimmer, Robert Küffner, Katrin Fundel, 2006, German Conference on Bioinformatics.

Addressing false discoveries in network inference

Ralf Zimmer, Robert Küffner, Tobias Petri, 2015, Bioinform..

Experiment Specific Expression Patterns

Ralf Zimmer, Robert Küffner, Tobias Petri, 2011, RECOMB.

Executable Petri net models for the analysis of metabolic pathways

Hartmann J. Genrich, Klaus Voss, Robert Küffner, 2001, International Journal on Software Tools for Technology Transfer.

KNIME4NGS: a comprehensive toolbox for next generation sequencing analysis

Tim Jeske, Robert Küffner, Hans-Werner Mewes, 2017, Bioinform..

On protocols and measures for the validation of supervised methods for the inference of biological networks

Pierre Geurts, Robert Küffner, Marie Schrynemackers, 2013, Front. Genet..

From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems

Nicola J. Mulder, Ralf Zimmer, Robert Küffner, 2011, Bioinform..

DREAMTools: a Python package for scoring collaborative challenges

Erhan Bilal, Pablo Meyer, Raquel Norel, 2015, F1000Research.

Analysis of Gene Expression Data with Pathway Scores

Thomas Lengauer, Alexander Zien, Ralf Zimmer, 2000, ISMB.

Data Processing Effects on the Interpretation of Microarray Gene Expression Experiments

Ralf Zimmer, Robert Küffner, Thomas Aigner, 2005, German Conference on Bioinformatics.

Pathway analysis in metabolic databases via differetial metabolic display (DMD)

Thomas Lengauer, Ralf Zimmer, Robert Küffner, 2000, German Conference on Bioinformatics.

Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts

Ralf Zimmer, Robert Küffner, Katrin Fundel, 2005, ECCB/JBI.

DREAMTools: a Python package for scoring collaborative challenges

Erhan Bilal, Pablo Meyer, Raquel Norel, 2015, F1000Research.

A Turing test for artificial expression data

Ralf Zimmer, Robert Küffner, Robert Maier, 2013, Bioinform..

miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature

Ralf Zimmer, Robert Küffner, Gergely Csaba, 2010, BMC Bioinformatics.

Algorithmische Systembiologie mit Petrinetzen – Von qualitativen zu quantitativen Systemmodellen

Caroline C. Friedel, Ralf Zimmer, Fabian Birzele, 2009, Informatik-Spektrum.

Rigorous assessment of gene set enrichment tests

Ralf Zimmer, Robert Küffner, Pegah Tavakkolkhah, 2012, Bioinform..

RelEx - Relation extraction using dependency parse trees

Ralf Zimmer, Robert Küffner, Katrin Fundel, 2007, Bioinform..

A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae

Simon Dirmeier, Ralf Zimmer, Robert Küffner, 2013, Nucleic acids research.

KNIME4NGS: a comprehensive toolbox for next generation sequencing analysis.

Robert Küffner, Marie-Sophie Friedl, Maximilian Hastreiter, 2017, Bioinformatics.

Normalization and Gene p-Value Estimation: Issues in Microarray Data Processing

Ralf Zimmer, Robert Küffner, Thomas Aigner, 2008, Bioinformatics and biology insights.

Data and text mining RelEx — Relation extraction using dependency parse trees

Ralf Zimmer, Robert Küffner, Katrin Fundel, 2006 .