Frederick P. Roth

发表

Viral Perturbations of Host Networks Reflect Disease Etiology

Deok-Sun Lee, Albert-László Barabási, John Quackenbush, 2012, PLoS Comput. Biol..

Query Chem: a Google-powered web search combining text and chemical structures

Stuart L. Schreiber, Frederick P. Roth, Justin Klekota, 2006, Bioinform..

Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura

Marc S. Halfon, Frederick P. Roth, George M. Church, 2004, Bioinform..

Next generation software for functional trend analysis

Frederick P. Roth, Gabriel F. Berriz, John E. Beaver, 2009, Bioinform..

Characterizing gene sets with FuncAssociate

Chris Sander, Frederick P. Roth, Oliver D. King, 2003, Bioinform..

Protein Domain-Level Landscape of Cancer-Type-Specific Somatic Mutations

Fan Yang, Marc Vidal, Frederick P. Roth, 2015, PLoS Comput. Biol..

GoFish finds genes with combinations of Gene Ontology attributes

Frederick P. Roth, Oliver D. King, Gabriel F. Berriz, 2003, Bioinform..

Predicting phenotype from patterns of annotation

Frederick P. Roth, George M. Church, Aimée M. Dudley, 2003, ISMB.

Predicting co-complexed protein pairs using genomic and proteomic data integration

Frederick P. Roth, Oliver D. King, S. L. Wong, 2004, BMC Bioinformatics.

MaveRegistry: a collaboration platform for multiplexed assays of variant effect

Frederick P. Roth, Alan F. Rubin, Douglas M. Fowler, 2020, bioRxiv.

Target-Independent Prediction of Drug Synergies Using Only Drug Lipophilicity

Frederick P. Roth, Cem Meydan, Ivan Iossifov, 2014, J. Chem. Inf. Model..

Chemical substructures that enrich for biological activity

Frederick P. Roth, Justin Klekota, F. Roth, 2008, Bioinform..

Probabilistic Paths for Protein Complex Inference

Frederick P. Roth, Joel S. Bader, Hailiang Huang, 2006, Systems Biology and Computational Proteomics.

Supplementary Material 23

Albert-László Barabási, John Quackenbush, Rahul C. Deo, 2012 .

Multiplexed measurement of variant abundance and activity reveals VKOR topology, active site and human variant impact

Debora S. Marks, Frederick P. Roth, Jason J. Stephany, 2020, bioRxiv.

Using High-Throughput Screening Data To Discriminate Compounds with Single-Target Effects from Those with Side Effects

Stuart L. Schreiber, Erik Brauner, Frederick P. Roth, 2006, J. Chem. Inf. Model..

ChromoZoom: a flexible, fluid, web-based genome browser

Frederick P. Roth, Theodore R. Pak, T. Pak, 2012, Bioinform..

A reference map of the human binary protein interactome

Patrick Aloy, Gary D. Bader, Yang Wang, 2020, Nature.

SELPHI: correlation-based identification of kinase-associated networks from global phospho-proteomics data sets

Tony Pawson, Frederick P. Roth, Adrian Pasculescu, 2015, Nucleic Acids Res..

FuncBase : a resource for quantitative gene function annotation

Weidong Tian, Frederick P. Roth, Timothy R. Hughes, 2010, Bioinform..

Biomolecular Network Structure and Function

Frederick P. Roth, Lan V. Zhang, F. Roth, 2009, Encyclopedia of Complexity and Systems Science.

Interpreting Metabolomic Profiles using Unbiased Pathway Models

Luke Hunter, Rahul C. Deo, Frederick P. Roth, 2010, PLoS Comput. Biol..

Yeasts for the sustainability in viticulture and oenology : the “YesVite” Project

Frederick P. Roth, Ileana Vigentini, Concetta Compagno, 2014 .

MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect

Frederick P. Roth, Jay Shendure, Alan F. Rubin, 2019, Genome Biology.

The Synergizer service for translating gene, protein and other biological identifiers

Frederick P. Roth, Gabriel F. Berriz, G. Berriz, 2008, Bioinform..

Systematic identification of phosphorylation-mediated protein interaction switches

Matthew J. Betts, Robert B. Russell, Peer Bork, 2017, PLoS Comput. Biol..

Why clinical trials are terminated

Frederick P. Roth, Theodore R. Pak, Maria D. Rodriguez, 2015 .

MaveRegistry: a collaboration platform for multiplexed assays of variant effect

Frederick P. Roth, Alan F. Rubin, Douglas M. Fowler, 2021, Bioinform..

Prioritizing genes for systematic variant effect mapping

Frederick P. Roth, Keith Nykamp, Jochen Weile, 2020, Bioinform..

A Resource of Quantitative Functional Annotation for Homo sapiens Genes

Judith A. Blake, Weidong Tian, Frederick P. Roth, 2012, G3: Genes | Genomes | Genetics.

A Genome-Wide Gene Function Prediction Resource for Drosophila melanogaster

Marc Vidal, Frederick P. Roth, Michael E. Cusick, 2010, PloS one.

A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis

Lilia M. Iakoucheva, Richard Bonneau, Kahn Rhrissorrakrai, 2008, Cell.

Identification of Neuronal RNA Targets of TDP-43-containing Ribonucleoprotein Complexes

Frederick P. Roth, Can Cenik, Junmin Peng, 2010, The Journal of Biological Chemistry.

A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human

Minoru Yoshida, Yu Xia, Frederick P. Roth, 2016, Cell.

Prediction of similarly-acting cis-regulatory modules by subsequence profiling and comparative genomics in D . melanogaster and D . pseudoobscura

Marc S. Halfon, Frederick P. Roth, George M. Church, 2004 .

Reconstitution of human RNA interference in budding yeast

Frederick P. Roth, Yo Suzuki, Joseph C. Mellor, 2011, Nucleic acids research.

A SARS-CoV-2 – host proximity interactome

Brett Larsen, Brian Raught, Anne-Claude Gingras, 2020, bioRxiv.

Multiplexed assays of variant effects contribute to a growing genotype–phenotype atlas

Frederick P. Roth, Jochen Weile, Jochen Weile, 2018, Human Genetics.

Functional Specificity among Ribosomal Proteins Regulates Gene Expression

Pamela A. Silver, Frederick P. Roth, P. Silver, 2007, Cell.

Novel cardiovascular gene functions revealed via systematic phenotype prediction in zebrafish

Frederick P. Roth, Quaid Morris, Khalid Zuberi, 2014, Development.

Shaking Duration and Resonance Frequencies From 2d Hybrid Modelling For The Region of Cologne (germany)

Frederick P. Roth, S. Parolai, Sandra M. Richwalski, 2002 .

Erratum: Literature-curated protein interaction datasets (Nature Methods (2009) 6 (39-46))

Marc Vidal, Frederick P. Roth, Michael E. Cusick, 2009 .

A reference map of the human protein interactome

Gary D. Bader, Yang Wang, Gary D Bader, 2019, bioRxiv.