Shun-Long Weng

发表

miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database

Hsien-Da Huang, Wen-Lian Hsu, Yu-Ling Lin, 2015, Nucleic Acids Res..

CircNet: a database of circular RNAs derived from transcriptome sequencing data

Hsien-Da Huang, Jianrong Li, Sheng-Da Hsu, 2015, Nucleic Acids Res..

Genome-wide discovery of viral microRNAs based on phylogenetic analysis and structural evolution of various human papillomavirus subtypes

Tzong-Yi Lee, Julia Tzu-Ya Weng, Kai-Yao Huang, 2017, Briefings Bioinform..

miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions

Hsien-Da Huang, Yu-Ling Lin, I-En Liao, 2013, Nucleic Acids Res..

MDD-carb: a combinatorial model for the identification of protein carbonylation sites with substrate motifs

Tzong-Yi Lee, Justin Bo-Kai Hsu, Kai-Yao Huang, 2017, BMC Systems Biology.

Characterization and identification of lysine glutarylation based on intrinsic interdependence between positions in the substrate sites

Tzong-Yi Lee, Justin Bo-Kai Hsu, Kai-Yao Huang, 2019, BMC Bioinformatics.

Multi-omics profiling reveals microRNA-mediated insulin signaling networks

Sirjana Shrestha, Siang-Jyun Tu, Shun-Long Weng, 2020, BMC Bioinformatics.

MethHC: a database of DNA methylation and gene expression in human cancer

Hsien-Da Huang, Yi-Ming Sun, Chih-Hung Chou, 2014, Nucleic Acids Res..

SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites

Tzong-Yi Lee, Cheng-Tsung Lu, Julia Tzu-Ya Weng, 2016, BMC Genomics.

A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing

Hsien-Da Huang, Tzu-Hao Chang, Chih-Hung Chou, 2013, BMC Genomics.

A new scheme to discover functional associations and regulatory networks of E3 ubiquitin ligases

Tzong-Yi Lee, Julia Tzu-Ya Weng, Kai-Yao Huang, 2016, BMC Systems Biology.

UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines

Tzong-Yi Lee, Min-Gang Su, Shun-Long Weng, 2016, BMC Systems Biology.

miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions

Hsien-Da Huang, Wen-Lian Hsu, Sirjana Shrestha, 2017, Nucleic Acids Res..

Investigation and identification of protein carbonylation sites based on position-specific amino acid composition and physicochemical features

Tzong-Yi Lee, Kai-Yao Huang, Hsin-Yao Wang, 2017, BMC Bioinformatics.

Clinical detection of human probiotics and human pathogenic bacteria by using a novel high-throughput platform based on next generation sequencing

Hsien-Da Huang, Tzu-Ling Yang, Shun-Long Weng, 2014, Journal of Clinical Bioinformatics.

An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs

Jorng-Tzong Horng, Hsien-Da Huang, Justin Bo-Kai Hsu, 2013, BMC Bioinformatics.

Integrated MicroRNA–mRNA Analysis Reveals miR-204 Inhibits Cell Proliferation in Gastric Cancer by Targeting CKS1B, CXCL1 and GPRC5A

Hsien-Da Huang, Chih-Hung Chou, Sirjana Shrestha, 2017, International journal of molecular sciences.

MDD-Palm: Identification of protein S-palmitoylation sites with substrate motifs based on maximal dependence decomposition

Tzong-Yi Lee, Shun-Long Weng, Hui-Ju Kao, 2017, PloS one.

A systematic review of microRNA expression profiling studies in human gastric cancer

Hsien-Da Huang, Sirjana Shrestha, Sheng-Da Hsu, 2014, Cancer medicine.

A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs

Tzong-Yi Lee, Neil Arvin Bretaña, Cheng-Tsung Lu, 2015, BMC Bioinformatics.

Identifying Protein Phosphorylation Sites with Kinase Substrate Specificity on Human Viruses

Tzong-Yi Lee, Neil Arvin Bretaña, Cheng-Tsung Lu, 2012, PloS one.

Large-Scale Investigation of Human TF-miRNA Relations Based on Coexpression Profiles

Hsien-Da Huang, Shun-Long Weng, Ann-Ping Tsou, 2014, BioMed research international.