Boris E. Shakhnovich

发表

Improving the Precision of the Structure–Function Relationship by Considering Phylogenetic Context

Boris E. Shakhnovich, B. Shakhnovich, 2005, PLoS Comput. Biol..

Correction: Improving the Precision of the Structure–Function Relationship by Considering Phylogenetic Context

Boris E. Shakhnovich, B. Shakhnovich, 2005, PLoS Comput. Biol..

A First-Principles Model of Early Evolution: Emergence of Gene Families, Species, and Preferred Protein Folds

Eugene I. Shakhnovich, Peiqiu Chen, Boris E. Shakhnovich, 2007, PLoS Comput. Biol..

ELISA: Structure-Function Inferences based on statistically significant and evolutionarily inspired observations

Charles DeLisi, Eugene I. Shakhnovich, David Lorenz, 2003, BMC Bioinformatics.

A graph-theoretical treatment of protein domain evolution

Boris E. Shakhnovich, 2004 .

Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites

Charles DeLisi, Timothy E. Reddy, Boris E. Shakhnovich, 2007, PLoS Comput. Biol..

Relative contributions of structural designability and functional diversity in molecular evolution of duplicates

Boris E. Shakhnovich, B. Shakhnovich, 2006, ISMB.

Natural selection of more designable folds: A mechanism for thermophilic adaptation

Eugene I. Shakhnovich, Jeremy L. England, Boris E. Shakhnovich, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Positional clustering improves computational binding site detection and identifies novel cis-regulatory sites in mammalian GABAA receptor subunit genes

Charles DeLisi, Timothy E. Reddy, Boris E. Shakhnovich, 2007, Nucleic acids research.

Expanding protein universe and its origin from the biological Big Bang

Eugene I Shakhnovich, Nikolay V Dokholyan, Boris E. Shakhnovich, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Defining functional distance using manifold embeddings of gene ontology annotations

Gilad Lerman, Boris E. Shakhnovich, Boris E Shakhnovich, 2007, Proceedings of the National Academy of Sciences.

Positional clustering improves computational binding site detection and identifies novel cis -regulatory sites in mammalian GABA A receptor subunit genes.

Charles DeLisi, Timothy E Reddy, Timothy E. Reddy, 2007, Nucleic acids research.

Protein structure and evolutionary history determine sequence space topology.

Eric J. Deeds, Boris E. Shakhnovich, C. DeLisi, 2004, Genome research.

Origins and impact of constraints in evolution of gene families.

Eugene V Koonin, Boris E. Shakhnovich, Boris E Shakhnovich, 2006, Genome research.

E I Shakhnovich, Boris E. Shakhnovich, E. Shakhnovich, 2006, Journal of molecular biology.

Functional fingerprints of folds: evidence for correlated structure-function evolution.

Charles DeLisi, Eugene I Shakhnovich, Nikolay V Dokholyan, 2003, Journal of molecular biology.

Assessing transcription factor motif drift from noisy decoy sequences.

Timothy E. Reddy, Boris E. Shakhnovich, C. DeLisi, 2005, Genome informatics. International Conference on Genome Informatics.