Yael Mandel-Gutfreund

发表

Computational Challenges in RNA-Based Gene Regulation: Protein-RNA Recognition, Regulation and Prediction (Dagstuhl Seminar 17252)

Rolf Backofen, Yael Mandel-Gutfreund, Uwe Ohler, 2017, Dagstuhl Reports.

SMARTIV: combined sequence and structure de-novo motif discovery for in-vivo RNA binding data

Yael Mandel-Gutfreund, Zohar Yakhini, Maya Polishchuk, 2018, Nucleic Acids Res..

Patch Finder Plus (PFplus): A web server for extracting and displaying positive electrostatic patches on protein surfaces

Yael Mandel-Gutfreund, Fabian Glaser, Shula Shazman, 2007, Nucleic Acids Res..

PROTEIN-NUCLEIC ACID INTERACTIONS: INTEGRATING STRUCTURE, SEQUENCE, AND FUNCTION – Session Introduction

Ernest Fraenkel, Martha L. Bulyk, Alexander J. Hartemink, 2007 .

A Structure-Based Approach for Prediction of Protein Binding Sites in Gene-Upstream Regions

Hanah Margalit, Yael Mandel-Gutfreund, A. Baron, 2000, Pacific Symposium on Biocomputing.

Classifying RNA-Binding Proteins Based on Electrostatic Properties

Yael Mandel-Gutfreund, Shula Shazman, Shula Shazman, 2008, PLoS Comput. Biol..

Progress in Predicting Protein Function from Structure: Unique Features of O-Glycosidases

Yael Mandel-Gutfreund, E. W. Stawiski, A. C. Lowenthal, 2002, Pacific Symposium on Biocomputing.

Mutual enrichment in aggregated ranked lists with applications to gene expression regulation

Yael Mandel-Gutfreund, Zohar Yakhini, Ilona Kifer, 2017, Bioinform..

An Integrated Regulatory Network Reveals Pervasive Cross-Regulation among Transcription and Splicing Factors

Predrag Radivojac, Yael Mandel-Gutfreund, Idit Kosti, 2012, PLoS Comput. Biol..

RBPmap: a web server for mapping binding sites of RNA-binding proteins

Yael Mandel-Gutfreund, Inbal Paz, Melissa S. Cline, 2014, Nucleic Acids Res..

DRIMust: a web server for discovering rank imbalanced motifs using suffix trees

Yael Mandel-Gutfreund, Zohar Yakhini, Inbal Paz, 2013, Nucleic Acids Res..

Mutual enrichment in aggregated ranked lists with applications to gene expression regulation

Yael Mandel-Gutfreund, Zohar Yakhini, Ilona Kifer, 2016, Bioinform..

BindUP: a web server for non-homology-based prediction of DNA and RNA binding proteins

Yael Mandel-Gutfreund, Inbal Paz, Efrat Kligun, 2016, Nucleic Acids Res..

SFmap: a web server for motif analysis and prediction of splicing factor binding sites

Yael Mandel-Gutfreund, Inbal Paz, Iris Dror, 2010, Nucleic Acids Res..

Evaluation of COVID-19 RT-qPCR test in multi-sample pools

Yael Mandel-Gutfreund, Roy Kishony, Amir Argoetti, 2020, medRxiv.

A supervised learning approach for taxonomic classification of core-photosystem-II genes and transcripts in the marine environment

Yael Mandel-Gutfreund, Ilana Berman-Frank, Oded Béjà, 2009, BMC Genomics.

Correction: Classifying RNA-Binding Proteins Based on Electrostatic Properties

Yael Mandel-Gutfreund, Shula Shazman, 2008, PLoS Computational Biology.

Viral photosynthetic reaction center genes and transcripts in the marine environment

Shibu Yooseph, Yael Mandel-Gutfreund, Michael Shmoish, 2007, The ISME Journal.

Covariation between homeodomain transcription factors and the shape of their DNA binding sites

Remo Rohs, Yael Mandel-Gutfreund, Tianyin Zhou, 2013, Nucleic acids research.

A structural-based statistical approach suggests a cooperative activity of PUM1 and miR-410 in human 3'-untranslated regions

Yael Mandel-Gutfreund, Zohar Yakhini, Limor Leibovich, 2010, Silence.

The Saccharomyces cerevisiae GSK-3 beta homologs.

Yael Mandel-Gutfreund, Y. Kassir, Y. Mandel-Gutfreund, 2006, Current drug targets.

On the significance of alternating patterns of polar and non-polar residues in beta-strands.

Yael Mandel-Gutfreund, Y. Mandel-Gutfreund, L. Gregoret, 2002, Journal of molecular biology.

Annotating nucleic acid-binding function based on protein structure.

Yael Mandel-Gutfreund, Eric W Stawiski, Y. Mandel-Gutfreund, 2003, Journal of molecular biology.

Revealing unique properties of the ribosome using a network based analysis

Yael Mandel-Gutfreund, Y. Mandel-Gutfreund, Hilda David-Eden, 2008, Nucleic acids research.

A computational approach for genome-wide mapping of splicing factor binding sites

Yael Mandel-Gutfreund, Martin Akerman, Y. Mandel-Gutfreund, 2009, Genome Biology.

A combined sequence and structure based method for discovering enriched motifs in RNA from in vivo binding data.

Yael Mandel-Gutfreund, Zohar Yakhini, Maya Polishchuk, 2017, Methods.

Contributions of residue pairing to β-sheet formation:conservation and covariation of amino acid residue pairs on antiparallel β-strands 1 1 Edited by J. Thornton

Yael Mandel-Gutfreund, Y. Mandel-Gutfreund, L. Gregoret, 2001 .

Detection and measurement of alternative splicing using splicing-sensitive microarrays.

Yael Mandel-Gutfreund, Tyson A. Clark, Lily Shiue, 2005, Methods.

Exploring functional relationships between components of the gene expression machinery

Yael Mandel-Gutfreund, Tyson A. Clark, Lily Shiue, 2005, Nature Structural &Molecular Biology.

Does distance matter? Variations in alternative 3′ splicing regulation

Yael Mandel-Gutfreund, Martin Akerman, Y. Mandel-Gutfreund, 2007, Nucleic acids research.

Alternative splicing regulation at tandem 3′ splice sites

Yael Mandel-Gutfreund, Martin Akerman, Y. Mandel-Gutfreund, 2006, Nucleic acids research.