Gil Alterovitz

发表

BIOMOLECULAR NETWORKS: FROM ANALYSIS TO SYNTHESIS – SESSION INTRODUCTION

Gil Alterovitz, Judith A. Blake, Jonathan M. Dreyfuss, 2008 .

Knowledge-Based Bioinformatics: From analysis to interpretation

Gil Alterovitz, Marco F. Ramoni, M. Ramoni, 2010 .

netAE: semi-supervised dimensionality reduction of single-cell RNA sequencing to facilitate cell labeling

Gil Alterovitz, Zhengyang Dong, G. Alterovitz, 2020, Bioinform..

Erratum to "Bioinformatics and Proteomics: An Engineering Problem Solving-Based Approach"

Gil Alterovitz, Marco Ramoni, 2007, IEEE Trans. Educ..

Seeing the forest through the trees: uncovering phenomic complexity through interactive network visualization

Gil Alterovitz, Joshua C. Denny, Jeremy L. Warner, 2015, J. Am. Medical Informatics Assoc..

Biobrick chain recommendations for genetic circuit design

Gil Alterovitz, Bowen Gong, Song Yu, 2017, Comput. Biol. Medicine.

Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity

Gil Alterovitz, Matvey B Palchuk, Feichen Shen, 2020, J. Am. Medical Informatics Assoc..

Extracting causal relations from the literature with word vector mapping

Gil Alterovitz, Ning An, Jing Yuan, 2019, Comput. Biol. Medicine.

Session Introduction

Gil Alterovitz, Judith A. Blake, Jonathan M. Dreyfuss, 2003, Pacific Symposium on Biocomputing.

Bayesian Methods in Biomedical Data Analysis

Gil Alterovitz, Hsun-Hsien Chang, 2014 .

Brief communication: External phenome analysis enables a rational federated query strategy to detect changing rates of treatment-related complications associated with multiple myeloma

Gil Alterovitz, Jeremy L. Warner, Kelly Bodio, 2013, J. Am. Medical Informatics Assoc..

Causal discovery based on healthcare information

Gil Alterovitz, Ning An, Lian Li, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

Accelerating incremental wrapper based gene selection with K-Nearest-Neighbor

Gil Alterovitz, Guilin Chen, Ning An, 2014, 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Bayesian methods for proteomics

Gil Alterovitz, Jonathan Liu, Marco F Ramoni, 2007, Proteomics.

Nonlinear dimensionality reduction methods for synthetic biology biobricks’ visualization

Gil Alterovitz, Ning An, Haipeng Wang, 2017, BMC Bioinformatics.

Discovering Biological Guilds through Topological Abstraction

Gil Alterovitz, Marco Ramoni, M. Ramoni, 2006, AMIA.

Bayesian prognostic model for genomic discovery in bipolar disorder

Gil Alterovitz, Amin Zollanvari, Swetha S. Bobba, 2014, 2014 IEEE Healthcare Innovation Conference (HIC).

Predicting of Associations Between MicroRNA and Human Diseases Based on Multiple Similarities and Arbitrarily-Order Proximity Network Embedding

Gil Alterovitz, Xiangrong Liu, Beizhan Wang, 2019, IEEE Access.

SNP by SNP by environment interaction network of alcoholism

Gil Alterovitz, Amin Zollanvari, A. Zollanvari, 2017, BMC Systems Biology.

GO PaD: the Gene Ontology Partition Database

Gil Alterovitz, Marco Ramoni, Michael Xiang, 2006, Nucleic Acids Res..

Gene Lethality Detection and Characterization via Topological Analysis of Regulatory Networks

Gil Alterovitz, Marco Ramoni, Vinayak Muralidhar, 2006, IEEE Transactions on Circuits and Systems I: Regular Papers.

Systems Bioinformatics: An Engineering Case-Based Approach

Gil Alterovitz, Marco F. Ramoni, Marco F. Ramoni, 2007 .

Phenometric analysis of electronic health records: a new approach to visualization of high dimensional biomedical information

Gil Alterovitz, Joshua C. Denny, Jeremy L. Warner, 2013, AMIA.

Order-disorder interface characterization reveals critical factors for disease and drug targets.

Gil Alterovitz, A Keith Dunker, Wei-Lun Hsu, 2013, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Accelerating wrapper-based feature selection with K-nearest-neighbor

Gil Alterovitz, Guilin Chen, Ning An, 2015, Knowl. Based Syst..

Phenome-Based Analysis as a Means for Discovering Context-Dependent Clinical Reference Ranges

Gil Alterovitz, Jeremy L. Warner, J. Warner, 2012, AMIA.

REVERSE ENGINEERING AND SYNTHESIS OF BIOMOLECULAR SYSTEMS – Session Introduction

Gil Alterovitz, Marco F. Ramoni, Silvio Cavalcanti, 2009 .

Wrapper-based gene selection with Markov blanket

Gil Alterovitz, Guilin Chen, Ning An, 2017, Comput. Biol. Medicine.

SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care

Gil Alterovitz, Shilin Zhu, Jeremy L. Warner, 2016, J. Am. Medical Informatics Assoc..

Improving PLS-RFE based gene selection for microarray data classification

Gil Alterovitz, Guilin Chen, Ning An, 2015, Comput. Biol. Medicine.

Classification of hospital acquired complications using temporal clinical information from a large electronic health record

Gil Alterovitz, Jeremy L. Warner, Jenny Liu, 2016, J. Biomed. Informatics.

A bayesian framework for statistical signal processing and knowledge discovery in proteomic engineering

Gil Alterovitz, Marco F. Ramoni, Isaac S. Kohane, 2005 .

A Bayesian Translational Framework for Knowledge Propagation, Discovery, and Integration Under Specific Contexts

Amin Zollanvari, Gil Alterovitz, Michelle Deng, 2012, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Switching variability index based multiple strategy CFAR detector

Gil Alterovitz, Yang Li, Zhenyuan Ji, 2014 .

An information theoretic framework for genomic data analysis

Gil Alterovitz, A. McKenna, 2008, 2008 8th IEEE International Conference on BioInformatics and BioEngineering.

Sparse online collaborative filtering with dynamic regularization

Gil Alterovitz, Beizhan Wang, Kangkang Li, 2019, Inf. Sci..

Subtype dependent biomarker identification and tumor classification from gene expression profiles

Gil Alterovitz, Guilin Chen, Li Liu, 2018, Knowl. Based Syst..

System-Wide Peripheral Biomarker Discovery Using Information Theory

Gil Alterovitz, Jonathan Liu, Marco Ramoni, 2007, Pacific Symposium on Biocomputing.

Linking Protein Mass with Function via Organismal Massome Networks

Gil Alterovitz, Eugenia Lyashenko, Marco Ramoni, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

An efficient causal structure learning algorithm for linear arbitrarily distributed continuous data

Gil Alterovitz, Yu Chen, Na Li, 2018, The Journal of Supercomputing.

Gene expression prediction using low-rank matrix completion

Gil Alterovitz, Arnav Kapur, Kshitij Marwah, 2016, BMC Bioinformatics.

BIOMOLECULAR NETWORKS: FROM ANALYSIS TO SYNTHESIS

Gil Alterovitz, Judith A. Blake, Jonathan M. Dreyfuss, 2009 .

Automation in Proteomics and Genomics

Gil Alterovitz, Marco F. Ramoni, Roseann Benson, 2009 .

Predicting hypertension without measurement: A non-invasive, questionnaire-based approach

Gil Alterovitz, Guilin Chen, Ning An, 2015, Expert Syst. Appl..

Automated Synthesis and Visualization of a Chemotherapy Treatment Regimen Network

Gil Alterovitz, Jeremy L. Warner, Peter C. Yang, 2014, MedInfo.

Incremental wrapper based gene selection with Markov blanket

Gil Alterovitz, Guilin Chen, Ning An, 2014, 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Is the reduction of dimensionality to a small number of features always necessary in constructing predictive models for analysis of complex diseases or behaviours?

Gil Alterovitz, Amin Zollanvari, Laura J. Bierut, 2011, 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Deep Probabilistic Matrix Factorization Framework for Online Collaborative Filtering

Gil Alterovitz, Fan Lin, Kangkang Li, 2019, IEEE Access.

Automation, parallelism, and robotics for proteomics

Gil Alterovitz, Jonathan Liu, Marco F Ramoni, 2006, Proteomics.

SMART on FHIR Genomics: facilitating standardized clinico-genomic apps

Gil Alterovitz, Jeremy L. Warner, Isaac S. Kohane, 2015, J. Am. Medical Informatics Assoc..

Modified Anderson-Darling Test-Based Target Detector in Non-Homogenous Environments

Gil Alterovitz, Yang Li, Yinsheng Wei, 2014, Sensors.

Sharing of Genomic Information: Perspectives from Stakeholders

Gil Alterovitz, Joshua C. Denny, Jeremy L. Warner, 2013, AMIA.

SMART Cancer Navigator: A Framework for Implementing ASCO Workshop Recommendations to Enable Precision Cancer Medicine.

Gil Alterovitz, Kenneth D Mandl, Jeremy L Warner, 2018, JCO precision oncology.

Automated programming for bioinformatics algorithm deployment

Gil Alterovitz, Marco Ramoni, Adnaan Jiwaji, 2008, Bioinform..

Constructing a Novel Cancer Ontology

Gil Alterovitz, Michael Gao, Jeremy L. Warner, 2013, AMIA.

Enabling Precision Medicine via standard communication of NGS provenance, analysis, and results

Gil Alterovitz, Carole Goble, Paul Walsh, 2017 .

Cut to the Chase: No Nonsense Guidelines for Blockchain Startups

Gil Alterovitz, John D. Halamka, Cees Hesp, 2018 .

Human Protein Meta-Interaction Database (HPMD) Potentiates Integration for Meta-Analysis

Gil Alterovitz, Marco F. Ramoni, Isaac S. Kohane, 2005 .

Mapping transcription mechanisms from multimodal genomic data

Gil Alterovitz, Marco Ramoni, Hsun-Hsien Chang, 2010, BMC Bioinformatics.

The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms

Gil Alterovitz, Marco Ramoni, Taro Muso, 2010, Briefings Bioinform..

Bioinformatics and Proteomics: An Engineering Problem Solving-Based Approach

Gil Alterovitz, Marco Ramoni, 2007, IEEE Transactions on Education.

A Partial Correlation Statistic Structure Learning Algorithm Under Linear Structural Equation Models

Gil Alterovitz, Ning An, Jing Yang, 2016, IEEE Transactions on Knowledge and Data Engineering.

Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities

Gil Alterovitz, May D. Wang, Amin Zollanvari, 2012, Briefings Bioinform..

Analytic Approaches to Phenotypic Complexity

Gil Alterovitz, Joshua C. Denny, Jeremy L. Warner, 2013, MedInfo.

Transfer Learning Based Multi-Objective Evolutionary Algorithm for Community Detection of Dynamic Complex Networks pdf

Gil Alterovitz, Beizhan Wang, Wenhua Zeng, 2021, ArXiv.

SARS-CoV-2 Drug Discovery based on Intrinsically Disordered Regions

Gil Alterovitz, Anish Mudide, G. Alterovitz, 2020, PSB.

Leveraging machine learning to characterize the role of socio-economic determinants on physical health and well-being among veterans

Gil Alterovitz, Cosmin A. Bejan, Christos A. Makridis, 2021, Comput. Biol. Medicine.

Interoperable genetic lab test reports: mapping key data elements to HL7 FHIR specifications and professional reporting guidelines

Gil Alterovitz, Guilherme Del Fiol, Stanley M. Huff, 2021, J. Am. Medical Informatics Assoc..

Transfer Learning Based Multi-Objective Genetic Algorithm for Dynamic Community Detection

Gil Alterovitz, Wenhua Zeng, Jungang Zou, 2021, 2109.15136.

An explainable machine learning platform for pyrazinamide resistance prediction and genetic feature identification of Mycobacterium tuberculosis

Gil Alterovitz, Andrew Zhang, Ling Teng, 2021, J. Am. Medical Informatics Assoc..

vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration

Gil Alterovitz, Aziz A. Boxwala, Robert H. Dolin, 2021, BMC Bioinformatics.

AI for infectious disease modelling and therapeutics

Gil Alterovitz, A. Keith Dunker, Wei-Lun Alterovitz, 2021, PSB.

All the World's a Stage: Facilitating Discovery Science and Improved Cancer Care through the Global Alliance for Genomics and Health.

Gil Alterovitz, Bin Tean Teh, Mark Lawler, 2015, Cancer discovery.

Automation in Proteomics and Genomics: An Engineering Case-Based Approach

Gil Alterovitz, Marco F. Ramoni, Roseann Benson, 2009 .

An artificial intelligence tool to predict fluid requirement in the intensive care unit: a proof-of-concept study

Gil Alterovitz, Peter Szolovits, Leo Anthony Celi, 2008, Critical care.

Protein network topology metric conservation: from yeast to human

Gil Alterovitz, Isaac S. Kohane, Marco F. Ramoni, 2005 .

Top 10 Blockchain Predictions for the (Near) Future of Healthcare

Gil Alterovitz, William J Buchanan, Vikram Dhillon, 2019, Blockchain in Healthcare Today.

Serum proteome profiling detects myelodysplastic syndromes and identifies CXC chemokine ligands 4 and 7 as markers for advanced disease

Gil Alterovitz, Xiao-Ying Meng, Rainer Haas, 2007, Proceedings of the National Academy of Sciences.

LEARNING FOR PROTEOMICS

Gil Alterovitz, Marco Ramoni, Ehsan Afkhami, 2005 .

Enabling precision medicine via standard communication of HTS provenance, analysis, and results

Gil Alterovitz, Carole Goble, Stian Soiland-Reyes, 2017, bioRxiv.

Ontology Engineering

Gil Alterovitz, Chris Mungall, Jane Lomax, 2019, Ontology Engineering.

Serum Protein Profiling with Mass Spectrometry for the Diagnosis of Myelodysplastic Syndromes.

Gil Alterovitz, Xiao-Ying Meng, Hasan H. Otu, 2004 .