Jhih-Wei Chu

发表

Information thermodynamics and Bayesian optimization: Applications to single molecule experiments

K. R. Haas, Jhih-Wei Chu, H. Yang, 2013 .

“Fluctuograms” Reveal the Intermittent Intra-Protein Communication in Subtilisin Carlsberg and Correlate Mechanical Coupling with Co-Evolution

Yuchun Lin, Jordi Silvestre-Ryan, Jhih-Wei Chu, 2011, PLoS Comput. Biol..

On the roles of substrate binding and hinge unfolding in conformational changes of adenylate kinase.

Jhih-Wei Chu, J. Chu, J. Brokaw, 2010, Biophysical journal.

Allostery of actin filaments: molecular dynamics simulations and coarse-grained analysis.

Gregory A Voth, Jhih-Wei Chu, G. Voth, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Coarse-grained modeling of the actin filament derived from atomistic-scale simulations.

Gregory A Voth, Jhih-Wei Chu, G. Voth, 2006, Biophysical journal.

Reaction Path Optimization with Holonomic Constraints and Kinetic Energy Potentials.

Jhih-Wei Chu, J. Chu, J. Brokaw, 2009, Journal of chemical theory and computation.

Bridging fluctuating hydrodynamics and molecular dynamics simulations of fluids.

Jhih-Wei Chu, J. Chu, Nikolaos K Voulgarakis, 2009, The Journal of chemical physics.

Kinetic modeling at single-molecule resolution elucidates the mechanisms of cellulase synergy

Jhih-Wei Chu, J. Chu, Barry Z. Shang, 2014 .

The multiscale challenge for biomolecular systems: coarse-grained modeling

Gregory A. Voth, Jhih-Wei Chu, G. Voth, 2006 .

A comprehensive picture of non-site specific oxidation of methionine residues by peroxides in protein pharmaceuticals.

Bernard R Brooks, Bernhardt L Trout, Jhih-Wei Chu, 2004, Journal of pharmaceutical sciences.

A structural and mechanistic study of the oxidation of methionine residues in hPTH(1-34) via experiments and simulations.

Bernhardt L Trout, Jhih-Wei Chu, Daniel I. C. Wang, 2004, Biochemistry.

Multiscale coarse-graining and structural correlations: connections to liquid-state theory.

Gregory A Voth, Gary S Ayton, W G Noid, 2007, The journal of physical chemistry. B.

Analysis of trajectory entropy for continuous stochastic processes at equilibrium.

Haw Yang, Jhih-Wei Chu, J. Chu, 2014, The journal of physical chemistry. B.

Molecular dynamics simulations and oxidation rates of methionine residues of granulocyte colony-stimulating factor at different pH values.

Bernhardt L Trout, Jhih-Wei Chu, Daniel I. C. Wang, 2004, Biochemistry.

Dissecting force interactions in cellulose deconstruction reveals the required solvent versatility for overcoming biomass recalcitrance.

Hyung Min Cho, Jhih-Wei Chu, J. Chu, 2011, Journal of the American Chemical Society.

Effects of Antioxidants on the Hydrogen Peroxide-Mediated Oxidation of Methionine Residues in Granulocyte Colony-Stimulating Factor and Human Parathyroid Hormone Fragment 13-34

Bernhardt L. Trout, Jhih-Wei Chu, Daniel I. C. Wang, 2004, Pharmaceutical Research.

Protein allostery at the solid-liquid interface: endoglucanase attachment to cellulose affects glucan clenching in the binding cleft.

Michael F. Crowley, Michael E. Himmel, Yuchun Lin, 2011, Journal of the American Chemical Society.

The multiscale coarse-graining method. II. Numerical implementation for coarse-grained molecular models.

Gregory A Voth, Gary S Ayton, Sergei Izvekov, 2008, The Journal of chemical physics.

Trajectory Entropy of Continuous Stochastic Processes at Equilibrium.

Haw Yang, Jhih-Wei Chu, J. Chu, 2014, The journal of physical chemistry letters.

Decomposition of energy and free energy changes by following the flow of work along reaction path.

Jhih-Wei Chu, J. Chu, K. Haas, 2009, The Journal of chemical physics.

Expectation-maximization of the potential of mean force and diffusion coefficient in Langevin dynamics from single molecule FRET data photon by photon.

Haw Yang, Jhih-Wei Chu, J. Chu, 2013, The journal of physical chemistry. B.

Inversion of radial distribution functions to pair forces by solving the Yvon-Born-Green equation iteratively.

Hyung Min Cho, Jhih-Wei Chu, J. Chu, 2009, The Journal of chemical physics.

The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models.

Gregory A. Voth, Sergei Izvekov, Avisek Das, 2008, The Journal of chemical physics.

Fisher information metric for the Langevin equation and least informative models of continuous stochastic dynamics.

Haw Yang, Jhih-Wei Chu, J. Chu, 2013, The Journal of chemical physics.

On the mechanisms of oxidation of organic sulfides by H2O2 in aqueous solutions.

Bernhardt L Trout, Jhih-Wei Chu, B. Trout, 2004, Journal of the American Chemical Society.

Coarse-grained free energy functions for studying protein conformational changes: a double-well network model.

Gregory A Voth, Jhih-Wei Chu, G. Voth, 2007, Biophysical journal.