Manuel N. Melo

Methods for multiscale modeling of membranes

Nicolae Goga, Herman J. C. Berendsen, Sv Silvia Nedea, 2012 .

Mixing and Matching Simulations at Different Resolutions

Herman J. C. Berendsen, Niculae Goga, Alex H. de Vries, 2014 .

Coarse-Grained Parameterization of Nucleotide Cofactors and Metabolites: Protonation Constants, Partition Coefficients, and Model Topologies

Filipe M. Sousa, Manuel N. Melo, Manuela M. Pereira, 2021, J. Chem. Inf. Model..

Prediction of Antibacterial Activity from Physicochemical Properties of Antimicrobial Peptides

Miguel A. R. B. Castanho, Manuel N. Melo, Eduard Bardají, 2011, PloS one.

MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations

Oliver Beckstein, Ian M. Kenney, Richard Gowers, 2016, SciPy.

Adaptive resolution simulation of an atomistic DNA molecule in MARTINI salt solution

Matej Praprotnik, Julija Zavadlav, Rudolf Podgornik, 2016, The European Physical Journal Special Topics.