David Otasek

Visual Data Mining of Biological Networks: One Size Does Not Fit All

Mario Cannataro, Giuseppe Agapito, Igor Jurisica, 2013, PLoS Comput. Biol..

NAViGaTOR: Large Scalable and Interactive Navigation and Analysis of Large Graphs

Igor Jurisica, Muhammad Ali, David Otasek, 2011, Internet Math..

Copycat Layout: Network layout alignment via Cytoscape Automation

David Otasek, Brett Settle, John H Morris, 2018, F1000Research.

NAViGaTOR: Network Analysis, Visualization and Graphing Toronto

Igor Jurisica, Muhammad Ali, Michael J. McGuffin, 2009, Bioinform..

Visual Data Mining: Effective Exploration of the Biological Universe

Igor Jurisica, Andreas Holzinger, Chiara Pastrello, 2014, Interactive Knowledge Discovery and Data Mining in Biomedical Informatics.

aMatReader: Importing adjacency matrices via Cytoscape Automation

David Otasek, Brett Settle, John H Morris, 2018, F1000Research.

The Cytoscape Automation app article collection [version 1; referees: Not peer reviewed]

Gary D. Bader, Benno Schwikowski, John H. Morris, 2018 .

Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in I2D

Igor Jurisica, Yun Niu, David Otasek, 2009, Bioinform..

The Cytoscape Automation app article collection

Benno Schwikowski, Gary D Bader, Trey Ideker, 2018, F1000Research.

Cytoscape Automation: empowering workflow-based network analysis

Alexander R. Pico, David Otasek, Barry Demchak, 2019, Genome Biology.