Upinder S. Bhalla

发表

Interoperability of Neuroscience Modeling Software: Current Status and Future Directions

Michael L. Hines, Marc-Oliver Gewaltig, Erik De Schutter, 2007, Neuroinformatics.

Signaling Logic of Activity-Triggered Dendritic Protein Synthesis: An mTOR Gate But Not a Feedback Switch

Upinder S. Bhalla, Pragati Jain, U. Bhalla, 2009, PLoS Comput. Biol..

Multiday Recordings from Olfactory Bulb Neurons in Awake Freely Moving Rats: Spatially and Temporally Organized Variability in Odorant Response Properties

James M. Bower, Upinder S. Bhalla, J. Bower, 1997, Journal of Computational Neuroscience.

NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail

Michael L. Hines, Andrew P. Davison, Robert C. Cannon, 2010, PLoS Comput. Biol..

Role of DARPP-32 and ARPP-21 in the Emergence of Temporal Constraints on Striatal Calcium and Dopamine Integration

Jeanette Kotaleski, Upinder S. Bhalla, Anu G. Nair, 2016, PLoS Comput. Biol..

Biochemical Signaling Networks Decode Temporal Patterns of Synaptic Input

Upinder S. Bhalla, U. Bhalla, 2002, Journal of Computational Neuroscience.

Author response: CA1 cell activity sequences emerge after reorganization of network correlation structure during associative learning

Upinder S. Bhalla, Mehrab N Modi, Ashesh K Dhawale, 2014 .

Memory Switches in Chemical Reaction Space

Naren Ramakrishnan, Upinder S. Bhalla, U. Bhalla, 2008, PLoS Comput. Biol..

Efficient Integration of Coupled Electrical-Chemical Systems in Multiscale Neuronal Simulations

Jeanette Kotaleski, Michael Hanke, Upinder S. Bhalla, 2016, Front. Comput. Neurosci..

PyMOOSE: Interoperable Scripting in Python for MOOSE

Upinder S. Bhalla, Subhasis Ray, U. Bhalla, 2008, Frontiers in neuroinformatics.

Run-Time Interoperability Between Neuronal Network Simulators Based on the MUSIC Framework

Örjan Ekeberg, Moritz Helias, Markus Diesmann, 2010, Neuroinformatics.

Summation in the Hippocampal CA3-CA1 Network Remains Robustly Linear Following Inhibitory Modulation and Plasticity, but Undergoes Scaling and Offset Transformations

Upinder S. Bhalla, Dhanya Parameshwaran, U. Bhalla, 2012, Front. Comput. Neurosci..

MOOSE, the Multiscale Object-Oriented Simulation Environment

Upinder S. Bhalla, Subhasis Ray, Niraj Dudani, 2014, Encyclopedia of Computational Neuroscience.

Multiscale modeling through MUSIC multi-simulation : Modeling a dendritic spine using MOOSE and NeuroRD

Jeanette Hellgren Kotaleski, Upinder S. Bhalla, Mikael Djurfeldt, 2011 .

Spike Detection for Large Neural Populations Using High Density Multielectrode Arrays

Luca Berdondini, Hayder Amin, Alessandro Maccione, 2015, Front. Neuroinform..

INDEX-db: The Indian Exome Reference Database (Phase I)

Jitender Saini, Upinder S. Bhalla, Ganesan Venkatasubramanian, 2019, J. Comput. Biol..

An odor delivery system for arbitrary time-varying patterns of odors, mixtures and concentrations

Upinder S. Bhalla, Priyanka Gupta, Dinu F. Albeanu, 2016 .

How To Record a Million Synaptic Weights in a Hippocampal Slice

Upinder S. Bhalla, 2008, PLoS Comput. Biol..

FindSim: A Framework for Integrating Neuronal Data and Signaling Models

Melanie I. Stefan, Upinder S. Bhalla, Nisha A. Viswan, 2018, Front. Neuroinform..

Genesis: a neuronal simulation system

James M. Bower, Upinder S. Bhalla, J. Bower, 1993 .

Different dimensions of robustness - noise, topology and rates - are nearly independent in chemical switches

Upinder S. Bhalla, Sahil Moza, U. Bhalla, 2020, bioRxiv.

NSDF: Neuroscience Simulation Data Format

Daniel K. Wójcik, Upinder S. Bhalla, Chaitanya Chintaluri, 2015, Neuroinformatics.

Adaptive stochastic-deterministic chemical kinetic simulations

Upinder S. Bhalla, Karan Vasudeva, U. Bhalla, 2004, Bioinform..

Multirate method for co-simulation of electrical-chemical systems in multiscale modeling

Jeanette Kotaleski, Michael Hanke, Upinder S. Bhalla, 2017, Journal of Computational Neuroscience.

Managing models of signaling networks

Upinder S. Bhalla, 2003, Neurocomputing.

Rallpacks: a set of benchmarks for neuronal simulators

James M. Bower, Upinder S. Bhalla, David H. Bilitch, 1992, Trends in Neurosciences.

Multiscale interactions between chemical and electric signaling in LTP induction, LTP reversal and dendritic excitability

Upinder S. Bhalla, U. Bhalla, 2011, Neural Networks.

The Network Within: Signaling Pathways

Upinder S. Bhalla, U. Bhalla, 1998 .

GENESIS: A System for Simulating Neural Networks

Matthew A. Wilson, James M. Bower, Upinder S. Bhalla, 1988, NIPS.

Computing with Proteins

Naren Ramakrishnan, John J. Tyson, Upinder S. Bhalla, 2009, Computer.

Molecular Switches at the Synapse Emerge from Receptor and Kinase Traffic

Upinder S. Bhalla, Arnold Hayer, U. Bhalla, 2005, PLoS Comput. Biol..

The chemical organization of signaling interactions

Upinder S. Bhalla, U. Bhalla, 2002, Bioinform..

The Database of Quantitative Cellular Signaling: management and analysis of chemical kinetic models of signaling networks

Upinder S. Bhalla, Jyoti Mishra, Sridhar Hariharaputran, 2003, Bioinform..

Minimum Information About a Simulation Experiment (MIASE)

Edmund J. Crampin, Olaf Wolkenhauer, Peter J. Hunter, 2011, PLoS Comput. Biol..

SWITCHES: Searchable Web Interface for Topologies of CHEmical Switches

Upinder S. Bhalla, Gubbi Vani HarshaRani, S. Moza, 2021, Bioinform..

A Spectrum of Models of Signaling Pathways

Upinder S. Bhalla, Sharat J. Vayttaden, Sriram M. Ajay, 2004 .

Kinetic measurement of ribosome motor stalling force

Upinder S. Bhalla, G. V. Shivashankar, U. Bhalla, 2004 .

Representation of Odor Habituation and Timing in the Hippocampus

Upinder S. Bhalla, Sachin S. Deshmukh, U. Bhalla, 2003, The Journal of Neuroscience.

Transcription Control Pathways Decode Patterned Synaptic Inputs into Diverse mRNA Expression Profiles

Upinder S. Bhalla, U. Bhalla, Pragati Jain, 2014, PloS one.

A propagating ERKII switch forms zones of elevated dendritic activation correlated with plasticity.

Upinder S. Bhalla, U. Bhalla, Sriram M. Ajay, 2007 .

Multi-compartmental Models of Neurons

Upinder S. Bhalla, U. Bhalla, 2012 .

Odor Representations in the Rat Olfactory Bulb Change Smoothly with Morphing Stimuli

Upinder S. Bhalla, Mukund Thattai, M. Thattai, 2008, Neuron.

Robustness of the bistable behavior of a biological signaling feedback loop.

Ravi Iyengar, Upinder S. Bhalla, U. Bhalla, 2001, Chaos.

Molecules, Networks, and Memory

Upinder S. Bhalla, 2009 .

Lateralization of membrane-associated protein kinase C in rat piriform cortex: Specific to operant training cues in the olfactory modality

James M. Bower, Upinder S. Bhalla, Daniel L. Alkon, 1994, Behavioural Brain Research.