Wout Bittremieux

发表

Git: How version control can power your research

Wout Bittremieux, 2016 .

Universal MS/MS Visualization and Retrieval with the Metabolomics Spectrum Resolver Web Service

Wout Bittremieux, Simon Rogers, Emma L. Schymanski, 2020 .

Proteomics Standards Initiative: Fifteen Years of Progress and Future Work

Martin Eisenacher, Wout Bittremieux, Yasset Perez-Riverol, 2017, Journal of proteome research.

MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra

Wout Bittremieux, Aida Mrzic, Kris Laukens, 2020, PloS one.

Unsupervised Quality Assessment of Mass Spectrometry Proteomics Experiments by Multivariate Quality Control Metrics.

Lennart Martens, Wout Bittremieux, Dirk Valkenborg, 2016, Journal of proteome research.

Algorithmic Learning for Auto-deconvolution of GC-MS Data to Enable Molecular Networking within GNPS

Wout Bittremieux, Alexander A. Aksenov, Yann Guitton, 2020, bioRxiv.

Extremely fast and accurate open modification spectral library searching of high-resolution mass spectra using feature hashing and graphics processing units

Wout Bittremieux, William Stafford Noble, Kris Laukens, 2019, bioRxiv.

spectrum_utils: A Python package for mass spectrometry data processing and visualization

Wout Bittremieux, W. Bittremieux, Wout Bittremieux, 2019, bioRxiv.

Fast open modification spectral library searching through approximate nearest neighbor indexing

Wout Bittremieux, William Stafford Noble, Kris Laukens, 2018, bioRxiv.

metrics from mass spectrometry experiments

Lennart Martens, Wout Bittremieux, Sven Nahnsen, 2014 .

Current challenges for epitope-agnostic TCR interaction prediction and a new perspective derived from image classification

Wout Bittremieux, Pieter Moris, Anna Postovskaya, 2019, bioRxiv.

Machine learning applications in proteomics research: How the past can boost the future

Lennart Martens, Harald Barsnes, Wout Bittremieux, 2014, Proteomics.

Designing biomedical proteomics experiments: state-of-the-art and future perspectives

Lennart Martens, Wout Bittremieux, Jan Ramon, 2016, Expert review of proteomics.

Fast Open Modification Spectral Library Searching through Approximate Nearest Neighbor Indexing.

Wout Bittremieux, William Stafford Noble, Kris Laukens, 2018, Journal of proteome research.

Discovery of significantly enriched subgraphs associated with selected vertices in a single graph

Bart Goethals, Wout Bittremieux, Yves Van de Peer, 2015, BIOKDD 2015.

Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data

Wout Bittremieux, Zheng Zhang, Yann Guitton, 2020, Nature Biotechnology.

Automated recommendation of metabolite substructures from mass spectra using frequent pattern mining

Wout Bittremieux, Aida Mrzic, Kris Laukens, 2017, bioRxiv.

Computational quality control tools for mass spectrometry proteomics

Lennart Martens, Wout Bittremieux, Dirk Valkenborg, 2017, Proteomics.

iMonDB: Mass Spectrometry Quality Control through Instrument Monitoring.

Lennart Martens, Wout Bittremieux, Dirk Valkenborg, 2015, Journal of proteome research.

A primer to frequent itemset mining for bioinformatics

Bart Goethals, Wout Bittremieux, Kris Laukens, 2013, Briefings Bioinform..

MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra

Wout Bittremieux, Aida Mrzic, Dirk Valkenborg, 2019 .

jqcML: an open-source java API for mass spectrometry quality control data in the qcML format.

Lennart Martens, Wout Bittremieux, Dirk Valkenborg, 2014, Journal of proteome research.

qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments

Lennart Martens, Wout Bittremieux, Juan Antonio Vizcaíno, 2014, Molecular & Cellular Proteomics.

The HUPO-PSI standardized spectral library format

Wout Bittremieux, Yasset Perez-Riverol, Juan Antonio Vizcaíno, 2020 .

Using expert driven machine learning to enhance dynamic metabolomics data analysis

Wout Bittremieux, Kris Laukens, Pieter Meysman, 2018 .

Proceedings of the EuBIC-MS 2020 Developers’ Meeting

Wout Bittremieux, Yasset Perez-Riverol, Eric W. Deutsch, 2020, EuPA Open Proteomics.

Using Expert Driven Machine Learning to Enhance Dynamic Metabolomics Data Analysis

Wout Bittremieux, Kris Laukens, Pieter Meysman, 2018, bioRxiv.

Proceedings of the EuBIC Winter School 2019

Wout Bittremieux, Alessio Soggiu, Julian Uszkoreit, 2019, EuPA open proteomics.

Precursor-free and fast spectral library search using approximate nearest neighbor techniques

Wout Bittremieux, Kris Laukens, 2015 .

Efficient reduction of candidate matches in peptide spectrum library searching using the top k most intense peaks.

Bart Goethals, Wout Bittremieux, Trung Nghia Vu, 2014, Journal of proteome research.

2018 YPIC Challenge: A case study in characterizing an unknown protein sample.

Wout Bittremieux, Andy Lin, Lindsay Pino, 2019, Journal of proteome research.

Proceedings of the EuBIC developer's meeting 2018.

Wout Bittremieux, Dieter Deforce, Julian Uszkoreit, 2018, Journal of proteomics.

Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph

Yvan Saeys, Bart Goethals, Wout Bittremieux, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Universal Spectrum Identifier for mass spectra

Wout Bittremieux, Yasset Perez-Riverol, Juan Antonio Vizcaíno, 2020, Nature Methods.

Detection of Enriched T Cell Epitope Specificity in Full T Cell Receptor Sequence Repertoires

Wout Bittremieux, Kris Laukens, Pieter Moris, 2018, bioRxiv.

Data for "Current challenges for epitope-agnostic TCR interaction prediction and a new perspective derived from image classification" (ImRex)

Wout Bittremieux, Pieter Moris, Anna Postovskaya, 2020 .

Extremely fast and accurate open modification spectral library searching of high-resolution mass spectra using feature hashing and graphics processing units

Wout Bittremieux, William Stafford Noble, Kris Laukens, 2019 .

Grasping frequent subgraph mining for bioinformatics applications

Boris Cule, Bart Goethals, Wout Bittremieux, 2018, BioData Mining.

Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification

Wout Bittremieux, Kris Laukens, Pieter Moris, 2020, Briefings Bioinform..

Reference data-set driven metabolomics

Wout Bittremieux, Kelly Weldon, Nicole Sikora, 2021 .

A community proposal to integrate proteomics activities in ELIXIR

Lennart Martens, Martin Eisenacher, Wout Bittremieux, 2017, F1000Research.

Quality control in mass spectrometry-based proteomics.

Lennart Martens, Wout Bittremieux, Kris Laukens, 2018, Mass spectrometry reviews.

On the feasibility of mining CD8+ T cell receptor patterns underlying immunogenic peptide recognition

Wout Bittremieux, Aida Mrzic, Kris Laukens, 2017, Immunogenetics.

The Human Proteome Organization-Proteomics Standards Initiative Quality Control Working Group: Making Quality Control More Accessible for Biological Mass Spectrometry.

Martin Eisenacher, Wout Bittremieux, Mathias Walzer, 2017, Analytical chemistry.