Taner Z. Sen

发表

MaizeGDB: The Maize Model Organism Database for Basic, Translational, and Applied Research

Carolyn J. Lawrence, Lisa C. Harper, Mary L. Schaeffer, 2008, International journal of plant genomics.

MaizeGDB: curation and outreach go hand-in-hand

Lisa C. Harper, Mary L. Schaeffer, Taner Z. Sen, 2011, Database J. Biol. Databases Curation.

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

Stephen P. Ficklin, Nic Herndon, Leonore Reiser, 2018, Database J. Biol. Databases Curation.

The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize

Julie A. Dickerson, Seung Yon Rhee, Mary L. Schaeffer, 2016, BMC Systems Biology.

A computational platform to maintain and migrate manual functional annotations for BioCyc databases

Julie A. Dickerson, Taner Z. Sen, Jesse R. Walsh, 2014, BMC Systems Biology.

Functional clustering of yeast proteins from the protein-protein interaction network

Andrzej Kloczkowski, Robert L. Jernigan, Taner Z. Sen, 2006, BMC Bioinformatics.

JBrowse Connect: A server API to connect JBrowse instances and users

Lincoln Stein, Taner Z. Sen, Ian Holmes, 2019, bioRxiv.

Predicting binding sites of hydrolase-inhibitor complexes by combining several methods

Vasant Honavar, Andrzej Kloczkowski, Robert L. Jernigan, 2004, BMC Bioinformatics.

MaizeGDB update: new tools, data and interface for the maize model organism database

Lisa C. Harper, Mary L. Schaeffer, Taner Z. Sen, 2015, Nucleic Acids Res..

MaizeGDB becomes ‘sequence-centric’

Volker Brendel, Lisa C. Harper, Mary L. Schaeffer, 2009, Database J. Biol. Databases Curation.

The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps

Lisa C. Harper, Mary L. Schaeffer, Taner Z. Sen, 2010, Bioinform..

Surveying the Maize community for their diversity and pedigree visualization needs to prioritize tool development and curation

Lisa C. Harper, Mary L. Schaeffer, Taner Z. Sen, 2017, Database J. Biol. Databases Curation.

FINDER: A fully automated pipeline to FIND accurate gene structures from proteins and RNA-Seq expression data

Taner Z. Sen, Roger P. Wise, Margaret Woodhouse, 2020, BCB.

Consensus Data Mining (CDM) Protein Secondary Structure Prediction Server: Combining GOR V and Fragment Database Mining (FDM)

Haitao Cheng, Andrzej Kloczkowski, Robert L. Jernigan, 2007, Bioinform..

MaizeGDB 2018: the maize multi-genome genetics and genomics database

Christine G. Elsik, Lisa C. Harper, Mary L. Schaeffer, 2018, Nucleic Acids Res..

Original article MaizeGDB becomes 'sequence-centric'

Carolyn J. Lawrence, Lisa C. Harper, Mary L. Schaeffer, 2009 .

The MaizeGDB Genome Browser tutorial: one example of database outreach to biologists via video

Lisa C. Harper, Mary L. Schaeffer, Taner Z. Sen, 2011, Database J. Biol. Databases Curation.

GOR V server for protein secondary structure prediction

Andrzej Kloczkowski, Robert L. Jernigan, Taner Z. Sen, 2005, Bioinform..

SNPversity: a web-based tool for visualizing diversity

Taner Z. Sen, John L. Portwood, Carson M. Andorf, 2018, Database J. Biol. Databases Curation.

Application of Molecular Simulations Toward Understanding Cellulase Mechanisms

Taner Z. Sen, Ragothaman M. Yennamalli, Mansi Arora, 2018, BioEnergy Research.

Building a successful international research community through data sharing: The case of the Wheat Information System (WheatIS)

Hadi Quesneville, Taner Z. Sen, Mario Caccamo, 2020, F1000Research.

Data Mining for Protein Secondary Structure Prediction

Haitao Cheng, Andrzej Kloczkowski, Robert L. Jernigan, 2009 .

POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data

John Quackenbush, Carolyn J. Lawrence, Lisa C. Harper, 2011, International journal of plant genomics.

The art of curation at a biological database: Principles and application

Taner Z. Sen, Gerard R. Lazo, Sarah G. Odell, 2017 .

Choosing a genome browser for a Model Organism Database: surveying the Maize community

Lisa C. Harper, Mary L. Schaeffer, Taner Z. Sen, 2010, Database J. Biol. Databases Curation.

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences

Taner Z. Sen, Carson M. Andorf, Roger P. Wise, 2021, bioRxiv.

An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community

Christopher J. Rawlings, Paul N. Schofield, Andrew J. Millar, 2010, Plant Cell.

Protein Promiscuity: Drug Resistance and Native Functions—HIV-1 Case

Andrzej Kloczkowski, Robert L. Jernigan, Taner Z. Sen, 2005, Journal of biomolecular structure & dynamics.

Optimizing the Parameters of the Gaussian Network Model for ATP-Binding Proteins

Robert L. Jernigan, Taner Z. Sen, R. Jernigan, 2005 .