Johan Trygg

发表

OnPLS—a novel multiblock method for the modelling of predictive and orthogonal variation

Tommy Löfstedt, Johan Trygg, J. Trygg, 2011 .

MASQOT: a method for cDNA microarray spot quality control

Daniel Eriksson, Johan Trygg, Michael Sjöström, 2005, BMC Bioinformatics.

2D wavelet analysis and compression of on‐line industrial process data

Johan Trygg, Nouna Kettaneh-Wold, Lars Wallbäcks, 2001 .

Simulering av samtalsdata från en telefonväxel

Johan Trygg, 2016 .

MASQOT-GUI: spot quality assessment for the two-channel microarray platform

Daniel Eriksson, Johan Trygg, Max Bylesjö, 2006, Bioinform..

Modelling human musculoskeletal functional movements using ultrasound imaging

Tommy Löfstedt, Johan Trygg, Anton Arndt, 2010, BMC Medical Imaging.

Analysis of Plant Cell Walls Using High-Throughput Profiling Techniques with Multivariate Methods.

Johan Trygg, Yu Gao, John P Moore, 2020, Methods in molecular biology.

Chemometrics and Intelligent Laboratory Systems

Johan Trygg, Pär Jonsson, Thomas Moritz, 2008 .

Proposed minimum reporting standards for data analysis in metabolomics

Douglas B. Kell, Age K. Smilde, Giovanni Paternostro, 2007, Metabolomics.

Background Estimation, Denoising, and Preprocessing

Johan Trygg, Jon Gabrielsson, Torbjörn Lundstedt, 2009 .

Orthogonal PLS (OPLS) Modeling for Improved Analysis and Interpretation in Drug Design

Erik Johansson, Johan Trygg, Lennart Eriksson, 2012, Molecular informatics.

Multiblock and Path Modeling with OnPLS

Tommy Löfstedt, Johan Trygg, Mohamed Hanafi, 2013 .

Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset

Johan Trygg, Tomas Skotare, Frida Torell, 2020, Metabolites.

doepipeline: a systematic approach to optimizing multi-level and multi-step data processing workflows

Johan Trygg, Daniel Svensson, David Sundell, 2018, BMC Bioinformatics.

OPLS methodology for analysis of pre-processing effects on spectroscopic data

Bernd Schmidt, Johan Trygg, Christian Airiau, 2006 .

Using chemometrics for navigating in the large data sets of genomics, proteomics, and metabonomics (gpm)

Erik Johansson, Fredrik Lindgren, Johan Trygg, 2004, Analytical and bioanalytical chemistry.

Orthogonal projections to latent structures as a strategy for microarray data normalization

Daniel Eriksson, Johan Trygg, Max Bylesjö, 2007, BMC Bioinformatics.

MirLocPredictor: A ConvNet-Based Multi-Label MicroRNA Subcellular Localization Predictor by Incorporating k-Mer Positional Information

Andreas Dengel, Sheraz Ahmed, Johan Trygg, 2020, Genes.

Multivariate strategy for the sample selection and integration of multi-batch data in metabolomics

Erik Johansson, Johan Trygg, Helena Idborg, 2017, Metabolomics.

Data Preprocessing : Background Estimation, Denoising, and Preprocessing ...

Johan Trygg, Jon Gabrielsson, Torbjörn Lundstedt, 2009 .

Multi- and Megavariate Data Analysis : Part II: Advanced Applications and Method Extensions

Johan Trygg, Svante Wold, Lennart Eriksson, 2006 .

O2-PLS regression and jack-knife based variable selection

Johan Trygg, Frank Westad, 2003 .

doepipeline: a systematic approach to optimizing multi-level and multi-step data processing workflows

Johan Trygg, Rickard Sjögren, Andreas Sjödin, 2019, BMC Bioinformatics.

Bioinformatics strategies for cDNA-microarray data processing

Patrik Rydén, Eva Freyhult, Mattias Landfors, 2009 .

II.2 Chemometrics in Metabolomics - An Introduction

Johan Trygg, Pär Jonsson, Thomas Moritz, 2006 .

Dynamic ultrasound imaging—A multivariate approach for the analysis and comparison of time-dependent musculoskeletal movements

Tommy Löfstedt, Johan Trygg, Olof Ahnlund, 2012, BMC Medical Imaging.

The OPLS methodology for analysis of multi‐block batch process data

Bernd Schmidt, Johan Trygg, Christian Airiau, 2006 .

From data processing to multivariate validation--essential steps in extracting interpretable information from metabolomics data.

Johan Trygg, Mattias Eliasson, Stefan Rännar, 2011, Current pharmaceutical biotechnology.

OnPLS path modelling

Tommy Löfstedt, Johan Trygg, Mohamed Hanafi, 2012 .

K-OPLS package: Kernel-based orthogonal projections to latent structures for prediction and interpretation in feature space

Johan Trygg, Mattias Rantalainen, Max Bylesjö, 2008, BMC Bioinformatics.

Multi-Tissue Metabolomics Integration Utilising Hierarchical Modelling and Data Integration Methods

Johan Trygg, Tomas Skotare, Frida Torell, 2019 .

Piecewise multivariate modelling of sequential metabolic profiling data

Timothy M. D. Ebbels, Johan Trygg, Mattias Rantalainen, 2008, BMC Bioinformatics.

The use of Focused hierarchical experimental design (F-HDOE) and OPLS in development of biological active compounds

Johan Trygg, Torbjörn Lundstedt, Katrin Lundstedt-Enkel, 2007 .

Combining process and spectroscopic data to improve batch modeling

Bernd Schmidt, Johan Trygg, Christian Airiau, 2006 .

OPLS methods for the analysis of hyperspectral images—comparison with MCR‐ALS

Johan Trygg, Magnus Fransson, Melanie Dumarey, 2014 .

The PLS method -- partial least squares projections to latent structures -- and its applications in industrial RDP (research, development, and production)

Johan Trygg, Svante Wold, Lennart Eriksson, 2004 .

ODIN: Outlier Detection In Neural Networks

Johan Trygg, Rickard Sjögren, J. Trygg, 2018 .

DeepCIS: An end-to-end Pipeline for Cell-type aware Instance Segmentation in Microscopic Images

Andreas Dengel, Johan Trygg, Sheraz Ahmed, 2021, 2021 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI).

Multiblock variable influence on orthogonal projections (MB-VIOP) for enhanced interpretation of total, global, local and unique variations in OnPLS models

Paul Geladi, Johan Trygg, Beatriz Galindo-Prieto, 2020, BMC Bioinformatics.

L2S-MirLoc: A Lightweight Two Stage MiRNA Sub-Cellular Localization Prediction Framework

Andreas Dengel, Johan Trygg, Muhammad Nabeel Asim, 2021, 2021 International Joint Conference on Neural Networks (IJCNN).

DeepCeNS: An end-to-end Pipeline for Cell and Nucleus Segmentation in Microscopic Images

Andreas Dengel, Johan Trygg, Sheraz Ahmed, 2021, 2021 International Joint Conference on Neural Networks (IJCNN).

Out-of-Distribution Example Detection in Deep Neural Networks using Distance to Modelled Embedding pdf

Johan Trygg, Rickard Sjögren, 2021, ArXiv.

Prediction and spectral profile estimation in multivariate calibration

Johan Trygg, 2004 .

Monitoring kidney-transplant patients using metabolomics and dynamic modeling

Johan Trygg, Hans Stenlund, Torbjörn Lundstedt, 2009 .

Evaluation of a protocol for metabolic profiling studies on human blood plasma by combined ultra-performance liquid chromatography/mass spectrometry: From extraction to data analysis.

Johan Trygg, Henrik Antti, Pär Jonsson, 2008, Analytical biochemistry.

Dynamic modelling of time series data in nutritional metabonomics — A powerful complement to randomized clinical trials in functional food studies

Johan Trygg, Torbjörn Lundstedt, Mattias Hedenström, 2010 .

Predictive metabolite profiling applying hierarchical multivariate curve resolution to GC-MS data--a potential tool for multi-parametric diagnosis.

Johan Lindberg, Johan Trygg, Henrik Antti, 2006, Journal of proteome research.

The PLS model space revisited

Barry M. Wise, Johan Trygg, John F. MacGregor, 2009 .

Tissue sample stability: thawing effect on multi-organ samples

Johan Trygg, Thomas Moritz, Torbjörn Lundstedt, 2015, Metabolomics.

ADC texture--an imaging biomarker for high-grade glioma?

Johan Trygg, Patrik Brynolfsson, Tufve Nyholm, 2014, Medical physics.

A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees

Johan Trygg, Torgeir R Hvidsten, Thomas Moritz, 2018, BMC Genomics.

Metabolic Profiling of Systemic Lupus Erythematosus and Comparison with Primary Sjögren’s Syndrome and Systemic Sclerosis

Johan Trygg, Anders A. Bengtsson, Thomas Moritz, 2016, PloS one.

Orthogonal projections to latent structures discriminant analysis modeling on in situ FT-IR spectral imaging of liver tissue for identifying sources of variability.

Johan Trygg, Björn Sundberg, Hans Stenlund, 2008, Analytical chemistry.

Bi‐modal OnPLS

Tommy Löfstedt, Johan Trygg, Lennart Eriksson, 2012 .

Global, local and unique decompositions in OnPLS for multiblock data analysis.

Tommy Löfstedt, Johan Trygg, J. Trygg, 2013, Analytica chimica acta.

Integrated analysis of transcript, protein and metabolite data to study lignin biosynthesis in hybrid aspen.

Johan Trygg, Jan Karlsson, Max Bylesjö, 2009, Journal of proteome research.

Metabolite Signature during Short-Day Induced Growth Cessation in Populus

Johan Trygg, Atsushi Fukushima, Miyako Kusano, 2011, Front. Plant Sci..

Chemometrics in Metabolomics — An Introduction

Johan Trygg, Pär Jonsson, Thomas Moritz, 2006 .

Cell-specific chemotyping and multivariate imaging by combined FT-IR microspectroscopy and orthogonal projections to latent structures (OPLS) analysis reveals the chemical landscape of secondary xylem.

Johan Trygg, Björn Sundberg, Hans Stenlund, 2011, The Plant journal : for cell and molecular biology.

Chemometrics in metabonomics.

Johan Trygg, Elaine Holmes, Torbjörn Lundstedt, 2007, Journal of proteome research.

Environmental and hormonal regulation of the activity-dormancy cycle in the cambial meristem involves stage-specific modulation of transcriptional and metabolic networks.

Johan Trygg, Thomas Moritz, Annika Johansson, 2007, The Plant journal : for cell and molecular biology.

Metabolic Profiling of Multiorgan Samples: Evaluation of MODY5/RCAD Mutant Mice.

Johan Trygg, Thomas Moritz, Torbjörn Lundstedt, 2018, Journal of proteome research.

OnPLS-Based Multi-Block Data Integration: A Multivariate Approach to Interrogating Biological Interactions in Asthma

Paul Geladi, Johan Trygg, Craig E Wheelock, 2018, Analytical chemistry.

Variable influence on projection (VIP) for orthogonal projections to latent structures (OPLS)

Johan Trygg, Lennart Eriksson, Beatriz Galindo-Prieto, 2014 .

Multivariate analysis of congruent images (MACI)

Johan Trygg, Svante Wold, Lennart Eriksson, 2005 .

Joint and Unique Multiblock Analysis for Integration and Calibration Transfer of NIR Instruments.

Paul Geladi, Johan Trygg, Tomas Skotare, 2019, Analytical chemistry.

Consensus by Democracy. Using Meta-Analyses of Microarray and Genomic Data to Model the Cold Acclimation Signaling Pathway in Arabidopsis1[W]

Johan Trygg, Matt Geisler, J. Trygg, 2006, Plant Physiology.

OPLS in batch monitoring - Opens up new opportunities.

Johan Trygg, Lennart Eriksson, Nabil Souihi, 2015, Analytica chimica acta.

Following the compositional changes of fresh grape skin cell walls during the fermentation process in the presence and absence of maceration enzymes.

Johan Trygg, John P Moore, Anscha J J Zietsman, 2015, Journal of agricultural and food chemistry.

Design of experiments on 135 cloned poplar trees to map environmental influence in greenhouse.

Erik Johansson, Johan Trygg, Magnus Hertzberg, 2011, Analytica chimica acta.

Variable influence on projection (VIP) for OPLS models and its applicability in multivariate time series analysis

Johan Trygg, Lennart Eriksson, Beatriz Galindo-Prieto, 2015 .

Serum metabolite signature predicts the acute onset of diabetes in spontaneously diabetic congenic BB rats

Johan Trygg, Thomas Moritz, Hans Stenlund, 2011, Metabolomics.

O2‐PLS, a two‐block (X–Y) latent variable regression (LVR) method with an integral OSC filter

Johan Trygg, Svante Wold, S. Wold, 2003 .

Chemometrics in metabolomics--a review in human disease diagnosis.

Johan Trygg, Torbjörn Lundstedt, T. Lundstedt, 2010, Analytica chimica acta.

Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters

Johan Trygg, Patrik Brynolfsson, Tufve Nyholm, 2017, Scientific Reports.

A strategy for modelling dynamic responses in metabolic samples characterized by GC/MS

Johan Lindberg, Johan Trygg, Henrik Antti, 2006, Metabolomics.

PLS‐trees®, a top‐down clustering approach

Johan Trygg, Svante Wold, Lennart Eriksson, 2009 .

Study of Preprocessing Methods for the Determination of Crystalline Phases in Binary Mixtures of Drug Substances by X-ray Powder Diffraction and Multivariate Calibration

Tom Artursson, Johan Trygg, Sven P. Jacobsson, 2000 .

CV‐ANOVA for significance testing of PLS and OPLS® models

Johan Trygg, Svante Wold, Lennart Eriksson, 2008 .

OnPLS integration of transcriptomic, proteomic and metabolomic data shows multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants

Patrik Rydén, Eva Freyhult, Tommy Löfstedt, 2013, BMC Genomics.

Data integration in plant biology: the O2PLS method for combined modeling of transcript and metabolite data.

Daniel Eriksson, Johan Trygg, Max Bylesjö, 2007, The Plant journal : for cell and molecular biology.

A multivariate approach using attenuated total reflectance mid-infrared spectroscopy to measure the surface mannoproteins and β-glucans of yeast cell walls during wine fermentations.

Johan Trygg, Benoit Divol, Hélène Nieuwoudt, 2015, Journal of agricultural and food chemistry.

Generalized Subset Designs in Analytical Chemistry.

Erik Johansson, Johan Trygg, Izabella Surowiec, 2017, Analytical chemistry.

Advantages of orthogonal inspection in chemometrics

Johan Trygg, Johan Gottfries, Rui Pinto, 2012 .

Separating Y‐predictive and Y‐orthogonal variation in multi‐block spectral data

Erik Johansson, Johan Trygg, Svante Wold, 2006 .

High-throughput data analysis for detecting and identifying differences between samples in GC/MS-based metabolomic analyses.

Johan Trygg, Henrik Antti, Pär Jonsson, 2005, Analytical chemistry.

Calibration Transfer for Predicting Lake-Water pH from near Infrared Spectra of Lake Sediments

Paul Geladi, Johan Trygg, Svante Wold, 1999 .

Strategy for optimizing LC-MS data processing in metabolomics: a design of experiments approach.

Erik Johansson, Johan Trygg, Thomas Moritz, 2012, Analytical chemistry.

Unlocking interpretation in near infrared multivariate calibrations by orthogonal partial least squares.

Erik Johansson, Johan Trygg, Hans Stenlund, 2009, Analytical chemistry.

Orthogonal signal correction, wavelet analysis, and multivariate calibration of complicated process fluorescence data

Rasmus Bro, Erik Johansson, Johan Trygg, 2000 .

A chemometrics toolbox based on projections and latent variables

Johan Trygg, Svante Wold, Lennart Eriksson, 2014 .