Stefano Beretta

Luis Muñoz, Ivan Merelli, Luciano Milanesi, 2016, 2016 24th Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP).

8th Workshop on Biomedical and Bioinformatics Challenges for Computer Science - BBC2015

Riccardo Dondi, Mario Cannataro, Stefano Beretta, 2015, ICCS.

Comparing Deep and Machine Learning Approaches in Bioinformatics: A miRNA-Target Prediction Case Study

Ivan Merelli, Stefano Beretta, Mauro Castelli, 2019, ICCS.

Corrigendum to "Parameterized tractability of the maximum-duo preservation string mapping problem" [Theoret. Comput. Sci. 646(2016) 16-25]

Riccardo Dondi, Stefano Beretta, Mauro Castelli, 2016, Theor. Comput. Sci..

Parallel Computing in Deep Learning: Bioinformatics Case Studiesa

Ivan Merelli, Daniele D'Agostino, Daniele Cesini, 2019, 2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP).

A hybrid genetic algorithm for the repetition free longest common subsequence problem

Leonardo Vanneschi, Stefano Beretta, Mauro Castelli, 2013, Oper. Res. Lett..

Correcting gene tree by removal and modification: Tractability and approximability

Riccardo Dondi, Stefano Beretta, Mauro Castelli, 2015, J. Discrete Algorithms.

Covering Pairs in Directed Acyclic Graphs

Paola Bonizzoni, Riccardo Dondi, Yuri Pirola, 2013, Comput. J..

Correcting Gene Trees by Leaf Insertions: Complexity and Approximation

Riccardo Dondi, Stefano Beretta, 2016, Electron. Notes Theor. Comput. Sci..

Rank miRNA: a web tool for identifying polymorphisms altering miRNA target sites

Ivan Merelli, Stefano Beretta, Carlo Maj, 2017, ICCS.

Algorithms for Strings and Sequences: Pairwise Alignment

Stefano Beretta, 2019, Encyclopedia of Bioinformatics and Computational Biology.

Improving eQTL Analysis Using a Machine Learning Approach for Data Integration: A Logistic Model Tree Solution

Ivan Merelli, Stefano Beretta, Mauro Castelli, 2018, J. Comput. Biol..

Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs

Paola Bonizzoni, Yuri Pirola, Gianluca Della Vedova, 2014, J. Comput. Biol..

VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites

Ivan Merelli, Luciano Milanesi, Stefano Beretta, 2017, BMC Bioinformatics.

HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Paola Bonizzoni, Murray Patterson, Gianluca Della Vedova, 2017, BMC Bioinformatics.

Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern Matching to a Hypertext

Paola Bonizzoni, Luca Denti, Marco Previtali, 2017, AlCoB.

Low-Power Architectures for miRNA-Target Genome Wide Analysis

Ivan Merelli, Daniele D'Agostino, Andrea Ferraro, 2017, 2017 25th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP).

9th Workshop on Biomedical and Bioinformatics Challenges for Computer Science - BBC2016

Mario Cannataro, Stefano Beretta, Mauro Castelli, 2016, ICCS.

Computing Empirical P-Values for Estimating Gene-Gene Interactions in Genome-Wide Association Studies: A Parallel Computing Approach

Ivan Merelli, Daniele D'Agostino, Stefano Beretta, 2018, 2018 26th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP).

A Scalable Genetic Programming Approach to Integrate miRNA-Target Predictions: Comparing Different Parallel Implementations of M3GP

Luis Muñoz, Ivan Merelli, Luciano Milanesi, 2018, Complex..

γ-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites

Paola Bonizzoni, Yuri Pirola, Ivan Merelli, 2019, Bioinform..

Predicting Variants of Alternative Splicing from NGS data without the Genome pdf

Paola Bonizzoni, Gianluca Della Vedova, Stefano Beretta, 2011, ArXiv.

Network Properties

Luca Denti, Marco Previtali, Stefano Beretta, 2019, Encyclopedia of Bioinformatics and Computational Biology.

HIV-1-mediated insertional activation of STAT5B and BACH2 trigger viral reservoir in T regulatory cells

Ivan Merelli, Stefano Beretta, Laura Passerini, 2017, Nature Communications.

Precise Gene Editing Preserves Hematopoietic Stem Cell Function following Transient p53-Mediated DNA Damage Response

Ivan Merelli, Stefano Beretta, Andrea Calabria, 2019, Cell stem cell.

Efficient gene editing of human long-term hematopoietic stem cells validated by clonal tracking

Ivan Merelli, Stefano Beretta, Davide Cittaro, 2020, Nature Biotechnology.