Alexander Artyomenko

发表

Long single-molecule reads can resolve the complexity of the Influenza virus composed of rare, closely related mutant variants

Eleazar Eskin, Alex Zelikovsky, Alexander Artyomenko, 2016, bioRxiv.

kGEM: An EM-based algorithm for local reconstruction of viral quasispecies

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

2SNV: Quasispecies reconstruction from PacBio reads

Eleazar Eskin, Alex Zelikovsky, Alexander Artyomenko, 2015, 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Agent-Based in Silico Evolution of HCV Quasispecies

Pavel Skums, Alex Zelikovsky, Yuri Khudyakov, 2017, ISBRA.

Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling

Ion I. Mandoiu, Pavel Skums, Zoya Dimitrova, 2015, Bioinform..

Reconstruction of influenza a virus variants from PacBio reads

Eleazar Eskin, Alex Zelikovsky, Alexander Artyomenko, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2013, BMC Bioinformatics.

CliqueSNV: An Efficient Noise Reduction Technique for Accurate Assembly of ViralVariants from NGS Data

Alexander Zelikovsky, Andrew Melnyk, Alexander Artyomenko, 2020 .

Deterministic regression algorithm for transcriptome frequency estimation

Ion I. Mandoiu, Alex Zelikovsky, Alexander Artyomenko, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data

Pavel Skums, Zoya Dimitrova, David S. Campo, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Estimation of viral population structure from amplicon-based reads

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants

Eleazar Eskin, Alex Zelikovsky, Alexander Artyomenko, 2016, RECOMB.

Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning

Pavel Skums, Alex Zelikovsky, Yuri Khudyakov, 2017, ICCABS.

Effective Risk-Based Monitoring

Alexander Artyomenko, 2015 .

Error Correction of NGS Reads from Viral Populations

Pavel Skums, Zoya Dimitrova, David S. Campo, 2016 .

Inference of genetic relatedness between viral quasispecies from sequencing data

Pavel Skums, Alex Zelikovsky, Alexander Artyomenko, 2017, BMC Genomics.

k GEM : An Expectation Maximization Error Correction Algorithm for Next Generation Sequencing of Amplicon-based Data

Pavel Skums, Alex Zelikovsky, Alexander Artyomenko, 2013 .

Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction

Pavel Skums, Alexander Artyomenko, Sergey Knyazev, 2018, bioRxiv.