Serghei Mangul

Eleazar Eskin, Alex Zelikovsky, Alexander Artyomenko, 2015, 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Enhancing rigor and reproducibility by improving software availability, usability, and archival stability

Casey S. Greene, Serghei Mangul, Jun Li, 2020 .

Estimation of alternative splicing isoform frequencies from RNA-Seq data

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2010, Algorithms for Molecular Biology.

Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Analysis of multiple fungal sequence repositories highlights shortcomings in microbial databases

Eleazar Eskin, Serghei Mangul, David Koslicki, 2018, bioRxiv.

TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads

Ion I. Mandoiu, Alex Zelikovsky, Dumitru Brinza, 2012, BMC Bioinformatics.

A comprehensive benchmarking of WGS-based structural variant callers

Eleazar Eskin, Serghei Mangul, Jonathan Flint, 2020, bioRxiv.

Improving the usability and comprehensiveness of microbial databases

Eleazar Eskin, Serghei Mangul, David Koslicki, 2018, BMC Biology.

Reconstruction of influenza a virus variants from PacBio reads

Eleazar Eskin, Alex Zelikovsky, Alexander Artyomenko, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

HapIso: An Accurate Method for the Haplotype- Specific Isoforms Reconstruction From Long Single-Molecule Reads

Eleazar Eskin, Alex Zelikovsky, Euan A. Ashley, 2017, IEEE Transactions on NanoBioscience.

Transcriptome assembly and quantification from Ion Torrent RNA-Seq data

Ion I. Mandoiu, Alex Zelikovsky, Dumitru Brinza, 2013, ICCABS.

Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2011, WABI.

Benchmarking of computational error-correction methods for next-generation sequencing data

Igor Mandric, Mihai Pop, Eleazar Eskin, 2020, BCB.

Applications of High-Fidelity Sequencing Protocol to RNA Viruses

Alexander Zelikovsky, Eleazar Eskin, Nicholas C. Wu, 2016 .

Deterministic regression algorithm for transcriptome frequency estimation

Ion I. Mandoiu, Alex Zelikovsky, Alexander Artyomenko, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Recommendations to enhance rigor and reproducibility in biomedical research

Casey S. Greene, Serghei Mangul, Jun Li, 2020, GigaScience.

Using bioinformatics training to boost research capacities in resource-limited regions

Eleazar Eskin, Pavel A. Pevzner, Serghei Mangul, 2018 .

PUMA: A tool for processing 16S rRNA taxonomy data for analysis and visualization

Serghei Mangul, Keith Mitchell, Christopher Dao, 2018, bioRxiv.

ROP: Dumpster Diving in RNA-sequencing to Find the Source of 1 Trillion Reads Across Diverse Adult Human Tissues

Harry Yang, Serghei Mangul, Noah Zaitlen, 2018, BCB.

Accurate viral population assembly from ultra-deep sequencing data

Eleazar Eskin, Alex Zelikovsky, Nicholas C. Wu, 2014, Bioinform..

Monte-Carlo Regression algorithm for isoform frequency estimation from RNA-Seq data

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

A comprehensive analysis of the usability and archival stability of omics computational tools and resources

Eleazar Eskin, Serghei Mangul, Keith Mitchell, 2018, bioRxiv.

Poster: ViSpA: Viral spectrum assembling method

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants

Eleazar Eskin, Alex Zelikovsky, Alexander Artyomenko, 2016, RECOMB.

Metagenomics for clinical diagnostics: technologies and informatics.

Eleazar Eskin, Serghei Mangul, Christopher E. Mason, 2019 .

VGA: A method for viral quasispecies assembly from ultra-deep sequencing data

Eleazar Eskin, Alex Zelikovsky, Nicholas C. Wu, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Inferring viral quasispecies spectra from 454 pyrosequencing reads

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2011, BMC Bioinformatics.

Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2010, WABI.

Flexible approach for novel transcript reconstruction from RNA-seq data using maximum likelihood integer programming

Alexander Zelikovsky, Ion I. Mandoiu, Dumitru Brinza, 2013, BICoB 2013.

Telescope: an interactive tool for managing large-scale analysis from mobile devices

Paulo Matias, Serghei Mangul, Jaqueline J. Brito, 2020, GigaScience.

A Novel Network Representation of SARS-CoV-2 Sequencing Data

Pavel Skums, Alex Zelikovsky, Serghei Mangul, 2021, ISBRA.

Challenges and recommendations to improve the installability and archival stability of omics computational tools

Eleazar Eskin, Serghei Mangul, Dat Duong, 2019, PLoS biology.