David Holcman

发表

The Neuroglial Potassium Cycle during Neurotransmission: Role of Kir4.1 Channels

Jérémie Sibille, Khanh Dao Duc, David Holcman, 2015, PLoS Comput. Biol..

Stability Analysis of Second-Order Switched Homogeneous Systems

Michael Margaliot, David Holcman, M. Margaliot, 2002, SIAM J. Control. Optim..

Modeling the Spontaneous Activity of the Auditory Cortex

David Holcman, Evgeniy Bart, Shaowen Bao, 2005, Journal of Computational Neuroscience.

The Narrow Escape Problem

David Holcman, Zeev Schuss, Z. Schuss, 2014, SIAM Rev..

The Emergence of Up and Down States in Cortical Networks

Misha Tsodyks, David Holcman, M. Tsodyks, 2006, PLoS Comput. Biol..

Analysis of the Mean First Looping Time of a Rod-Polymer

David Holcman, Assaf Amitai, Ivan Kupka, 2012, Multiscale Model. Simul..

Using default constraints of the spindle assembly checkpoint to estimate the associated chemical rates

David Holcman, Khanh Dao Duc, D. Holcman, 2012, BMC biophysics.

Multiscale models and stochastic simulation methods for computing rare but key binding events in cell biology

David Holcman, Claire Guerrier, D. Holcman, 2017, J. Comput. Phys..

Barriers to Diffusion in Dendrites and Estimation of Calcium Spread Following Synaptic Inputs

Armin Biess, David Holcman, Eduard Korkotian, 2011, PLoS Comput. Biol..

Unraveling novel features hidden in superresolution microscopy data

David Holcman, D. Holcman, 2013, Communicative & integrative biology.

Search Time for a Small Ribbon and Application to Vesicular Release at Neuronal Synapses

David Holcman, Claire Guerrier, D. Holcman, 2015, Multiscale Model. Simul..

Transient chromatin properties revealed by polymer models and stochastic simulations constructed from Chromosomal Capture data

David Holcman, Ofir Shukron, D. Holcman, 2017, PLoS Comput. Biol..

The Narrow Escape Problem in a Flat Cylindrical Microdomain with Application to Diffusion in the Synaptic Cleft

David Holcman, Jürgen Reingruber, D. Holcman, 2011, Multiscale Model. Simul..

Partially Reflected Diffusion

Amit Singer, David Holcman, Zeev Schuss, 2008, SIAM J. Appl. Math..

Oscillatory Survival Probability and Eigenvalues of the Non-Self-Adjoint Fokker-Planck Operator

David Holcman, Zeev Schuss, 2014, Multiscale Model. Simul..

Effective Motion of a Virus Trafficking Inside a Biological Cell

Thibault Lagache, David Holcman, T. Lagache, 2007, SIAM J. Appl. Math..

Synaptic dynamics and neuronal network connectivity are reflected in the distribution of times in Up states

Xiaowei Chen, Khanh Dao Duc, David Holcman, 2015, Front. Comput. Neurosci..

Analysis of Single Locus Trajectories for Extracting In Vivo Chromatin Tethering Interactions

David Holcman, Assaf Amitai, Mathias Toulouze, 2015, PLoS Comput. Biol..

Oscillatory Survival Probability: Analytical and Numerical Study of a Non-Poissonian Exit Time

Khanh Dao Duc, David Holcman, Zeev Schuss, 2016, Multiscale Model. Simul..

Modeling Calcium Dynamics in Dendritic Spines

David Holcman, Zeev Schuss, Z. Schuss, 2005, SIAM J. Appl. Math..

Structure of Topologically Associating Domains and gene regulation embedded in the 5C data revealed by a polymer model and stochastic simulations

David Holcman, Ofir Shukron, D. Holcman, 2016, bioRxiv.

Asymptotic Formulas for Extreme Statistics of Escape Times in 1, 2 and 3-Dimensions

David Holcman, Zeev Schuss, K. Basnayake, 2017, J. Nonlinear Sci..

Brownian Motion in Dire Straits

David Holcman, Zeev Schuss, Z. Schuss, 2012, Multiscale Model. Simul..

Mixed analytical-stochastic simulation method for the recovery of a Brownian gradient source from probability fluxes to small windows

David Holcman, Ulrich Dobramysl, D. Holcman, 2017, J. Comput. Phys..

Geometrical Effects on Nonlinear Electrodiffusion in Cell Physiology

David Holcman, Zeev Schuss, J. Cartailler, 2017, J. Nonlinear Sci..

Modeling the Early Steps of Cytoplasmic Trafficking in Viral Infection and Gene Delivery

Thibault Lagache, David Holcman, C. Amoruso, 2011, SIAM J. Appl. Math..

Commentary: New mathematical physics needed for life sciences

David Holcman, Zeev Schuss, Z. Schuss, 2016 .

Reconstruction of Surface and Stochastic Dynamics from a Planar Projection of Trajectories

David Holcman, Zeev Schuss, N. Hoze, 2013, SIAM J. Imaging Sci..

Calcium Dynamics in Neuronal Microdomains: Modeling, Stochastic Simulations, and Data Analysis

David Holcman, Claire Guerrier, Eduard Korkotian, 2014, Encyclopedia of Computational Neuroscience.

Extreme escape with killing for diffusing particles in one dimension

David Holcman, Suney Toste, 2022 .

Modeling bursting in neuronal networks using facilitation-depression and afterhyperpolarization

David Holcman, Lou Zonca, 2021, Commun. Nonlinear Sci. Numer. Simul..

Zeev Schuss' legacy: an unexpected path in applied mathematics

David Holcman, 2021 .

Asymptotics for the fastest among N stochastic particles: role of an extended initial distribution and an additional drift component

David Holcman, Suney Toste, D. Holcman, 2020, Journal of Physics A: Mathematical and Theoretical.

Diffusion laws in dendritic spines

David Holcman, Zeev Schuss, Z. Schuss, 2011, Journal of mathematical neuroscience.

Time scale of diffusion in molecular and cellular biology

David Holcman, Zeev Schuss, Z. Schuss, 2014 .

Residence times of receptors in dendritic spines analyzed by stochastic simulations in empirical domains.

David Holcman, D. Holcman, N. Hozé, 2014, Biophysical journal.

Modeling the step of endosomal escape during cell infection by a nonenveloped virus.

Thibault Lagache, David Holcman, Olivier Danos, 2012, Biophysical journal.

Single particle trajectories reveal active Endoplasmic Reticulum luminal flow

Clemens F Kaminski, Marcus Fantham, David Holcman, 2018, Nature Cell Biology.

Narrow escape to small windows on a small ball modeling the viral entry into the cell nucleus

Thibault Lagache, David Holcman, T. Lagache, 2016 .

A Mechanism for the Polarity Formation of Chemoreceptors at the Growth Cone Membrane for Gradient Amplification during Directional Sensing

David Holcman, Maxime Dahan, Cedric Bouzigues, 2010, PloS one.

Modeling synaptic dynamics driven by receptor lateral diffusion.

David Holcman, Antoine Triller, A. Triller, 2006, Biophysical journal.

Narrow Escape to a structured target and application to viral entry in the nucleus

Thibault Lagache, David Holcman, T. Lagache, 2016 .

Gated narrow escape time for molecular signaling.

David Holcman, Jürgen Reingruber, D. Holcman, 2009, Physical review letters.

Survival probability of diffusion with trapping in cellular neurobiology.

David Holcman, Zeev Schuss, Z. Schuss, 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.

Statistical evaluation of clusters derived by nonlinear mapping of EEG spatial patterns

David Holcman, Walter J. Freeman, John M. Barrie, 1999, Journal of Neuroscience Methods.

Stochastic Processes, Multiscale Modeling, and Numerical Methods for Computational Cellular Biology

David Holcman, David Holcman, 2017 .

Structural Fluctuations of the Chromatin Fiber within Topologically Associating Domains.

Guido Tiana, David Holcman, Edith Heard, 2016, Biophysical journal.

The dynamics of phosphodiesterase activation in rods and cones.

David Holcman, Jürgen Reingruber, D. Holcman, 2008, Biophysical journal.

Polymer physics of nuclear organization and function

David Holcman, Assaf Amitai, D. Holcman, 2016, bioRxiv.

The new nanophysiology: regulation of ionic flow in neuronal subcompartments

Rafael Yuste, David Holcman, R. Yuste, 2015, Nature Reviews Neuroscience.

Deconvolution of Voltage Sensor Time Series and Electro-Diffusion Modeling of Synaptic Input in Dendritic Spines

Rafael Yuste, David Holcman, Taekyung Kwon, 2017 .

The Limit of Photoreceptor Sensitivity

David Holcman, D. Holcman, J. I. Korenbrot, 2005, The Journal of general physiology.

Deconvolution of Voltage Sensor Time Series and Electro-diffusion Modeling Reveal the Role of Spine Geometry in Controlling Synaptic Strength

Rafael Yuste, David Holcman, R. Yuste, 2018, Neuron.

Quantifying neurite growth mediated by interactions among secretory vesicles, microtubules, and actin networks.

David Holcman, Krasimira Tsaneva-Atanasova, K. Tsaneva-Atanasova, 2009, Biophysical journal.

Dynamic regulation of spine–dendrite coupling in cultured hippocampal neurons

David Holcman, Eduard Korkotian, Menahem Segal, 2004, The European journal of neuroscience.

The Mean First Rotation Time of a Planar Polymer

David Holcman, Marc Yor, M. Yor, 2011, 1101.1737.

Erratum: Narrow escape through a funnel and effective diffusion on a crowded membrane [Phys. Rev. E 84, 021906 (2011)]

David Holcman, Z. Schuss, Nathanael Hoze, 2012 .

Transient Confinement of CaV2.1 Ca2+-Channel Splice Variants Shapes Synaptic Short-Term Plasticity

David Holcman, Pierre Parutto, Romy Freund, 2019, Neuron.

David Holcman, Yakar Kannai, Peter Greiner, 2002 .

Analysis of the Poisson–Nernst–Planck equation in a ball for modeling the Voltage–Current relation in neurobiological microdomains

David Holcman, Zeev Schuss, Z. Schuss, 2017 .

Computational and mathematical methods for morphogenetic gradient analysis, boundary formation and axonal targeting.

David Holcman, Jürgen Reingruber, D. Holcman, 2014, Seminars in cell & developmental biology.

Detection of single photons by toad and mouse rods

Gordon L. Fain, David Holcman, Alapakkam P. Sampath, 2013, Proceedings of the National Academy of Sciences.