Alexander Churkin

发表

RNA dot plots: an image representation for RNA secondary structure analysis and manipulations

Alexander Churkin, Danny Barash, D. Barash, 2013, Wiley interdisciplinary reviews. RNA.

An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions

Alexander Churkin, Danny Barash, D. Barash, 2008, BMC Bioinformatics.

The RNAmute web server for the mutational analysis of RNA secondary structures

Alexander Churkin, Danny Barash, Idan Gabdank, 2011, Nucleic Acids Res..

The HHD Dataset

Berat Kurar Barakat, Alexander Churkin, Irina Rabaev, 2020, 2020 17th International Conference on Frontiers in Handwriting Recognition (ICFHR).

A Robust and Efficient Numerical Method for RNA-Mediated Viral Dynamics

Alexander Churkin, Danny Barash, Vladimir Reinharz, 2017, Front. Appl. Math. Stat..

Design of RNAs: comparing programs for inverse RNA folding

Yann Ponty, Jérôme Waldispühl, Alexander Churkin, 2017, Briefings Bioinform..

Structural Analysis of Single-Point Mutations Given an RNA Sequence: A Case Study with RNAMute

Alexander Churkin, Danny Barash, D. Barash, 2006, EURASIP J. Adv. Signal Process..

incaRNAfbinv 2.0: a webserver and software with motif control for fragment-based design of RNAs

Jérôme Waldispühl, Alexander Churkin, Danny Barash, 2020, Bioinform..

A Parameter Estimation Method for Multiscale Models of Hepatitis C Virus Dynamics

Alexander Churkin, Danny Barash, Vladimir Reinharz, 2019, Bulletin of Mathematical Biology.

A Biologically Meaningful Extension of the Efficient Method for Deleterious Mutations Prediction in RNAs: Insertions and Deletions in Addition to Substitution Mutations

Alexander Churkin, Danny Barash, 2018, ISBRA.

RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequences

Alexander Churkin, Danny Barash, Assaf Avihoo, 2011, BMC Bioinformatics.

Efficient procedures for the numerical simulation of mid-size RNA kinetics

Alexander Churkin, Danny Barash, Iddo Aviram, 2012, Algorithms for Molecular Biology.

Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction

Alexander Churkin, Danny Barash, D. Barash, 2011, Briefings Bioinform..

RNAmute: RNA secondary structure mutation analysis tool

Alexander Churkin, Danny Barash, 2005, 2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05).

HCVMultiscaleFit: A Simulator For Parameter Estimation in Multiscale Models Of Hepatitis C Virus Dynamics.

Alexander Churkin, Vladimir Reinharz, Harel Dahari, 2020, AIP conference proceedings.

Efficient Methods for Parameter Estimation of Ordinary and Partial Differential Equation Models of Viral Hepatitis Kinetics

Alexander Churkin, Vladimir Reinharz, Harel Dahari, 2020, Mathematics.

On topological indices for small RNA graphs

Alexander Churkin, Danny Barash, Idan Gabdank, 2012, Comput. Biol. Chem..

Free energy minimization to predict RNA secondary structures and computational RNA design.

Alexander Churkin, Danny Barash, Lina Weinbrand, 2015, Methods in molecular biology.

Pattern Recognition Method to Detect Vulnerable Spots in an RNA Sequence for Bacterial Resistance to the Antibiotic Spectinomycin

Alexander Churkin, Danny Barash, D. Barash, 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05) - Workshops.

Bioinformatic Analysis of the Neutrality of RNA Secondary Structure Elements across genotypes reveals Evidence for Direct Evolution of Genetic Robustness in HCV

Alexander Churkin, Danny Barash, Yonat Shemer-Avni, 2010, J. Bioinform. Comput. Biol..

A Mathematical Analysis of RNA Structural Motifs in Viruses

Dmitrij Frishman, Alexander Churkin, Danny Barash, 2021, Mathematics.

RNAthermsw: Direct Temperature Simulations for Predicting the Location of RNA Thermometers

Alexander Churkin, Danny Barash, Michal Shapira, 2014, PloS one.