Pavel A Pevzner

发表

Andrey A Mironov, Pavel A Pevzner, 1998, Proceedings. String Processing and Information Retrieval: A South American Symposium (Cat. No.98EX207).

Combinatorial algorithms for design of DNA arrays.

Pavel A Pevzner, Sridhar Hannenhalli, Earl Hubell, 2002, Advances in biochemical engineering/biotechnology.

How to apply de Bruijn graphs to genome assembly.

Pavel A Pevzner, Glenn Tesler, Phillip E C Compeau, 2011, Nature biotechnology.

Metaviral SPAdes: assembly of viruses from metagenomic data

Dmitry Antipov, Alla Lapidus, Pavel A Pevzner, 2020, Bioinform..

SpectroGene: A Tool for Proteogenomic Annotations Using Top-Down Spectra.

Pavel A Pevzner, Xiaowen Liu, Mikhail Kolmogorov, 2016, Journal of proteome research.

Identification of post-translational modifications by blind search of mass spectra

Dekel Tsur, Vineet Bafna, Pavel A Pevzner, 2005, Nature Biotechnology.

TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats

Pavel A Pevzner, Alexey Gurevich, Alla Mikheenko, 2020, Bioinform..

The Fragile Breakage versus Random Breakage Models of Chromosome Evolution

Pavel A Pevzner, Glenn Tesler, Qian Peng, 2006, PLoS Comput. Biol..

MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities.

Hosein Mohimani, Rob Knight, Pavel A Pevzner, 2019, Cell systems.

Dereplication of peptidic natural products through database search of mass spectra

Neha Garg, Hosein Mohimani, Pavel A Pevzner, 2016, Nature chemical biology.

cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs

Pavel A Pevzner, Anton Bankevich, Zhoutao Chen, 2019, Bioinform..

The string decomposition problem and its applications to centromere analysis and assembly

Pavel A Pevzner, Tatiana Dvorkina, Andrey V Bzikadze, 2020, Bioinform..

Dereplication of microbial metabolites through database search of mass spectra

Liu Cao, Hosein Mohimani, Pavel A Pevzner, 2018, Nature Communications.

Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra*

Nuno Bandeira, Pavel A Pevzner, Kyowon Jeong, 2011, Molecular & Cellular Proteomics.

Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages.

Peer Bork, Pavel A Pevzner, Glenn Tesler, 2005, Genome research.

Comparative genomics reveals birth and death of fragile regions in mammalian evolution

Pavel A Pevzner, Max A Alekseyev, P. Pevzner, 2010, Genome Biology.

De Novo Sequencing of Peptides from Top-Down Tandem Mass Spectra.

Nikola Tolić, Ljiljana Paša-Tolić, Pavel A Pevzner, 2015, Journal of proteome research.

Corepressor-Dependent Silencing of Chromosomal Regions Encoding Neuronal Genes

Sing-Hoi Sze, Pavel A Pevzner, Gail Mandel, 2002, Science.

Identifying repeat domains in large genomes

Benjamin J Raphael, Benjamin J. Raphael, Haixu Tang, 2006, Genome Biology.

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum

Hamidreza Chitsaz, Shibu Yooseph, Pavel A Pevzner, 2013, Proceedings of the National Academy of Sciences.

Top-down analysis of immunoglobulin G isotypes 1 and 2 with electron transfer dissociation on a high-field Orbitrap mass spectrometer.

Pavel A Pevzner, Alexander Makarov, Yury O Tsybin, 2017, Journal of proteomics.

Interpretation of tandem mass spectra obtained from cyclic nonribosomal peptides.

Nuno Bandeira, Pavel A Pevzner, Bradley S Moore, 2009, Analytical chemistry.

Imaging mass spectrometry of intraspecies metabolic exchange revealed the cannibalistic factors of Bacillus subtilis

Pavel A Pevzner, Pieter C Dorrestein, Julio Ng, 2010, Proceedings of the National Academy of Sciences.

Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer.

Vineet Bafna, Pavel A Pevzner, David L Tabb, 2015, Journal of proteome research.

BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

Hosein Mohimani, Pavel A Pevzner, Iman Hajirasouliha, 2019, Genome research.

Mammalian phylogenomics comes of age.

Pavel A Pevzner, Stephen J O'Brien, P. Pevzner, 2004, Trends in genetics : TIG.

Algorithm for identification of fusion proteins via mass spectrometry.

Pavel A Pevzner, Julio Ng, P. Pevzner, 2008, Journal of proteome research.

Analyzing protease specificity and detecting in vivo proteolytic events using tandem mass spectrometry

Pavel A Pevzner, Nitin Gupta, Richard D. Smith, 2010, Proteomics.

Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra

Hosein Mohimani, Pavel A Pevzner, Anton Korobeynikov, 2018, Nature Microbiology.

What is the difference between the breakpoint graph and the de Bruijn graph?

Pavel A Pevzner, Sergey Nurk, P. Pevzner, 2014, BMC Genomics.

TruSPAdes: barcode assembly of TruSeq synthetic long reads

Pavel A Pevzner, Anton Bankevich, P. Pevzner, 2016, Nature Methods.

Shotgun Protein Sequencing

Nuno Bandeira, Pavel A Pevzner, Karl R Clauser, 2007, Molecular & Cellular Proteomics.

Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform

Pavel A Pevzner, Glenn Tesler, Sergey Nurk, 2013, Genome research.

Cycloquest: identification of cyclopeptides via database search of their mass spectra against genome databases.

Hosein Mohimani, Pavel A Pevzner, Michelle L Colgrave, 2011, Journal of proteome research.