Joshua M Stuart

Prophetic Granger Causality to infer gene regulatory networks

Evan O. Paull, Joshua M. Stuart, Kyle Ellrott, 2017, PloS one.

Exploring Integrative Analysis Using the BioMedical Evidence Graph

Kyle Ellrott, Brian Walsh, Jordan A Lee, 2020, JCO clinical cancer informatics.

TumorMap: Exploring the Molecular Similarities of Cancer Samples in an Interactive Portal.

David Haussler, Theodore C Goldstein, Sofie R Salama, 2017, Cancer research.

Towards zoomable multidimensional maps of the cell

Zhenjun Hu, Charles DeLisi, Minoru Kanehisa, 2007, Nature Biotechnology.

Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection

Ken Chen, David Haussler, Justin Guinney, 2018, bioRxiv.

Functionally Distinct Subsets of Lineage-Biased Multipotent Progenitors Control Blood Production in Normal and Regenerative Conditions.

Berthold Göttgens, Joshua M. Stuart, Daniel E. Carlin, 2015, Cell stem cell.

Toward better benchmarking: challenge-based methods assessment in cancer genomics

Andrea Califano, Joshua M. Stuart, Gustavo Stolovitzky, 2014, Genome Biology.