Thomas A. Down

发表

Dalliance: interactive genome viewing on the web

Tim J. P. Hubbard, Thomas A. Down, Matias Piipari, 2011, Bioinform..

Dasty and UniProt DAS: a perfect pair for protein feature visualization

Rolf Apweiler, Henning Hermjakob, Thomas A. Down, 2005, Bioinform..

Assessing Computational Methods of Cis-Regulatory Module Prediction

Sarah A. Teichmann, Jing Su, Thomas A. Down, 2010, PLoS Comput. Biol..

iMotifs: an integrated sequence motif visualization and analysis environment

Anton J. Enright, Tim J. P. Hubbard, Harpreet Kaur Saini, 2010, Bioinform..

Integrating biological data – the Distributed Annotation System

Hagen Blankenburg, Robert D. Finn, Andreas Prlic, 2008, BMC Bioinformatics.

A machine learning strategy to identify candidate binding sites in human protein-coding sequence

Tim J. P. Hubbard, Thomas A. Down, Bernard Leong, 2005, BMC Bioinformatics.

ddbRNA: detection of conserved secondary structures in multiple alignments

Diego di Bernardo, Tim J. P. Hubbard, Thomas A. Down, 2003, Bioinform..

Ensembl 2004

Damian Smedley, Heikki Lehväslaiho, Yuan Chen, 2004, Nucleic Acids Res..

Ensembl 2005

Damian Smedley, Ewan Birney, Javier Herrero, 2004, Nucleic Acids Res..

Whole-Genome Identification and Functional Analysis of Type 1 Diabetes-Associated Epigenetic Variation

Thomas A. Down, Stephan Beck, Huriya Beyan, 2010 .

Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster

Tim J. P. Hubbard, Casey M. Bergman, Jing Su, 2006, PLoS Comput. Biol..

The Distributed Annotation System for Integration of Biological Data

Robert D. Finn, Andreas Prlic, Tim J. P. Hubbard, 2006, DILS.

Ensembl 2002: accommodating comparative genomics

Alistair G. Rust, Heikki Lehväslaiho, Eduardo Eyras, 2003, Nucleic Acids Res..

Ensembl 2007

Andreas Prlic, Damian Smedley, Ewan Birney, 2006, Nucleic Acids Res..

Adding Some SPICE to DAS

Andreas Prlic, Tim J. P. Hubbard, Thomas A. Down, 2005, ECCB/JBI.

NestedMICA as an ab initio protein motif discovery tool

Tim J. P. Hubbard, Thomas A. Down, Mutlu Dogruel, 2008, BMC Bioinformatics.

Relevance Vector Machines for classifying points and regions in biological sequences.

Thomas A. Down, Tim J. P. Hubbard, 2008 .

Ensembl 2008

Andreas Prlic, Andrew M. Jenkinson, Damian Smedley, 2007, Nucleic Acids Res..

Metamotifs - a generative model for building families of nucleotide position weight matrices

Tim J. P. Hubbard, Thomas A. Down, Matias Piipari, 2010, BMC Bioinformatics.

An interactive genome browser of association results from the UK10K cohorts project

Jie Huang, Klaudia Walter, Tim J. P. Hubbard, 2015, Bioinform..

WormBase 2016: expanding to enable helminth genomic research

Kimberly Van Auken, Juancarlos Chan, Hans-Michael Müller, 2015, Nucleic Acids Res..

Integrating sequence and structural biology with DAS

Robert D. Finn, Andreas Prlic, Tim J. P. Hubbard, 2007, BMC Bioinformatics.

What can we learn from noncoding regions of similarity between genomes?

Tim J. P. Hubbard, Thomas A. Down, 2003, BMC Bioinformatics.

Sequence analysis

Andreas Prlic, Matthew R. Pocock, Andreas Dräger, 2003 .

A Comparison of Peak Callers Used for DNase-Seq Data

Thomas A. Down, Mikhail Spivakov, Tim Hubbard, 2014, bioRxiv.

The Ensembl genome database project

Philip Lijnzaad, Alistair G. Rust, Matthew R. Pocock, 2002, Nucleic Acids Res..

Ensembl 2006

Andreas Prlic, Damian Smedley, Daniel Rios, 2005, Nucleic Acids Res..

Identification of Type 1 Diabetes–Associated DNA Methylation Variable Positions That Precede Disease Diagnosis

Thomas A. Down, Stephan Beck, Huriya Beyan, 2010, PLoS genetics.

Chromatin Accessibility Data Sets Show Bias Due to Sequence Specificity of the DNase I Enzyme

Thomas A. Down, Hashem Koohy, T. Hubbard, 2013, PloS one.

Integrated Genetic and Epigenetic Analysis Identifies Haplotype-Specific Methylation in the FTO Type 2 Diabetes and Obesity Susceptibility Locus

Ian M. Morison, Mark I. McCarthy, Andrew E. Teschendorff, 2010, PloS one.