Samuel A. Assefa

发表

ABACAS: algorithm-based automatic contiguation of assembled sequences

Thomas M. Keane, Matthew Berriman, Samuel A. Assefa, 2009, Bioinform..

estMOI: estimating multiplicity of infection using parasite deep sequencing data

Samuel A. Assefa, Taane G. Clark, Colin J. Sutherland, 2014, Bioinform..

VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data

Samuel A. Assefa, Taane G. Clark, Mark D. Preston, 2012, Bioinform..

Prediction of Molecular Mechanisms of Breast Cancer Metastasis

Samuel A. Assefa, Geoffrey H. Siwo, G. Stolovitzky, 2017, bioRxiv.

New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq

Samuel A. Assefa, Thomas M. Keane, B. Barrell, 2010, Molecular microbiology.

A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi

Samuel A. Assefa, K. James, G. Dougan, 2009, PLoS genetics.

Evolutionary analysis of the most polymorphic gene family in falciparum malaria

Samuel A. Assefa, D. Kwiatkowski, M. Berriman, 2019, Wellcome open research.

A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs

Samuel A. Assefa, M. Berriman, C. Newbold, 2012, Nature Protocols.

Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus

Alejandro Sanchez-Flores, Samuel A. Assefa, Martin Hunt, 2011, PLoS pathogens.

Generating synthetic data in finance: opportunities, challenges and pitfalls

Samuel A. Assefa, 2020, ICAIF.

Drug-Resistant Genotypes and Multi-Clonality in Plasmodium falciparum Analysed by Direct Genome Sequencing from Peripheral Blood of Malaria Patients

Samuel A. Assefa, Taane G. Clark, Colin J. Sutherland, 2011, PloS one.

A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data

Samuel A. Assefa, T. Clark, N. Sepúlveda, 2013, BMC Genomics.

Neisseria meningitidis carriage rate, antibiotic susceptibility profile, and associated factors among prisoners at Jimma zonal correction facility in Jimma Town, Southwestern Ethiopia: a cross-sectional study

Samuel A. Assefa, Y. Alemu, Lencho Girma, 2022, Tropical Medicine and Health.

Mortality among neonates admitted to Hawassa University comprehensive and specialized hospital, Hawassa, Southern Ethiopia.

Samuel A. Assefa, A. Deressa, Shewangizaw Mekonnen Yadate, 2019 .

Advising Agent for Service-Providing Live-Chat Operators pdf

Sarit Kraus, Manuela Veloso, Samuel A. Assefa, 2021, AAMAS.

Genomic variation in two gametocyte non-producing Plasmodium falciparum clonal lines

Samuel A. Assefa, D. Kwiatkowski, T. Clark, 2016, Malaria Journal.

S IMULATING C ONTINUOUS - TIME H UMAN M OBILITY T RAJECTORIES

Samuel A. Assefa, Y. Liu, Sirisha Rambhatla, 2021 .

On the Importance of Opponent Modeling in Auction Markets

Manuela Veloso, Danilo Mandic, Samuel A. Assefa, 2019, 1911.12816.

Simulation Intelligence: Towards a New Generation of Scientific Methods pdf

Hector Zenil, Manuela Veloso, Atilim Gunecs Baydin, 2021, ArXiv.

SURF: improving classifiers in production by learning from busy and noisy end users

Samuel A. Assefa, T. Balch, M. Veloso, 2020, ICAIF.

Admixture in Humans of Two Divergent Plasmodium knowlesi Populations Associated with Different Macaque Host Species

Samuel A. Assefa, D. Conway, C. Duffy, 2015, PLoS pathogens.

Whole-Genome Scans Provide Evidence of Adaptive Evolution in Malawian Plasmodium falciparum Isolates

Samuel A. Assefa, D. Kwiatkowski, O. Doumbo, 2014, The Journal of infectious diseases.

A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains

Samuel A. Assefa, Diego F. Echeverry, D. Conway, 2014, Nature Communications.

PlasmoView: A Web-based Resource to Visualise Global Plasmodium falciparum Genomic Variation

Samuel A. Assefa, D. Conway, O. Doumbo, 2013, The Journal of infectious diseases.

Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya

Samuel A. Assefa, D. Kwiatkowski, M. Manske, 2013, Scientific Reports.

Charles Darwin University Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya Borrmann,

Samuel A. Assefa, D. Kwiatkowski, M. Manske, 2013 .

Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi

Samuel A. Assefa, D. Conway, T. Clark, 2015, Proceedings of the National Academy of Sciences.

Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity

Samuel A. Assefa, D. Kwiatkowski, D. Conway, 2015, BMC Genomics.

Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution

Samuel A. Assefa, D. Kwiatkowski, D. Conway, 2017, Molecular ecology.

Elucidating Emergence and Transmission of Multidrug-Resistant Tuberculosis in Treatment Experienced Patients by Whole Genome Sequencing

Samuel A. Assefa, T. Clark, J. Parkhill, 2013, PloS one.

Culture adaptation of malaria parasites selects for convergent loss-of-function mutants

Samuel A. Assefa, D. Kwiatkowski, D. Conway, 2017, Scientific Reports.

Microsatellite genotyping and genome-wide single nucleotide polymorphism-based indices of Plasmodium falciparum diversity within clinical infections

Samuel A. Assefa, Lee Murray, D. Kwiatkowski, 2016, Malaria Journal.

Copula Flows for Synthetic Data Generation pdf

Samuel A. Assefa, Sanket Kamthe, Marc Deisenroth, 2021, ArXiv.

Evolutionary analysis of the most polymorphic gene family in falciparum malaria

Samuel A. Assefa, D. Kwiatkowski, M. Berriman, 2019, Wellcome open research.

Tradeoffs in streaming binary classification under limited inspection resources pdf

Samuel A. Assefa, Parisa Hassanzadeh, Prashant Reddy, 2021, ICAIF.

Non-Parametric Stochastic Sequential Assignment With Random Arrival Times pdf

Samuel A. Assefa, Parisa Hassanzadeh, Danial Dervovic, 2021, IJCAI.