Kenneth P. Nephew

发表

Joel H. Saltz, Huaxia Qin, Michael W. Y. Chan, 2022 .

Genome-Wide Analysis and Modeling of DNA methylation susceptibility in 30 Breast Cancer Cell Lines by using CPG Flanking Sequences

Kenneth P. Nephew, Heejoon Chae, Sun Kim, 2013, J. Bioinform. Comput. Biol..

An ERα/modulator regulatory network in the breast cancer cells

Yunlong Liu, Kenneth P. Nephew, Tim Hui-Ming Huang, 2011, 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS).

Subtype-specific CpG island shore methylation and mutation patterns in 30 breast cancer cell lines

Kenneth P. Nephew, Heejoon Chae, Sun Kim, 2016, BMC Systems Biology.

A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer

Yadong Wang, Yunlong Liu, Pearlly Yan, 2011, BMC Systems Biology.

A dynamic time order network for time-series gene expression data analysis

Yang Xiang, Yunlong Liu, Kenneth P. Nephew, 2012, BMC Systems Biology.

A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha

Wei Zhang, Curtis Balch, Alfred S. L. Cheng, 2006, Bioinform..

Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray System

Kenneth P. Nephew, Tim Hui-Ming Huang, Lang Li, 2005, J. Comput. Biol..

BioVLAB-MMIA: A Reconfigurable Cloud Computing Environment for microRNA and mRNA Integrated Analysis

Kenneth P. Nephew, Suresh Marru, Chathura Herath, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine.

Empirical bayes model comparisons for differential methylation analysis

Yadong Wang, Yunlong Liu, Curtis Balch, 2011, GENSiPS.

MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression

Curtis Balch, Kenneth P. Nephew, Meng Li, 2009, Nucleic Acids Res..

Predicting DNA Methylation Susceptibility Using CpG Flanking Sequences

Dong Xu, Kenneth P. Nephew, Tim Hui-Ming Huang, 2007, Pacific Symposium on Biocomputing.

Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance

Yunlong Liu, Curtis Balch, Kenneth P. Nephew, 2009, Bioinform..

Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells

Curtis Balch, Kenneth P. Nephew, Tim Hui-Ming Huang, 2008, Bioinform..

BioVLAB-MMIA-NGS: microRNA-mRNA integrated analysis using high-throughput sequencing data

Kenneth P. Nephew, Heejoon Chae, Sun Kim, 2015, Bioinform..

Identification of Transcription Factor and microRNA Binding Sites from Array-derived Gene Expression Data

Yunlong Liu, Kenneth P. Nephew, Feng Zhou, 2007, International Conference on Bioinformatics & Computational Biology.

A novel k-mer mixture logistic regression for methylation susceptibility modeling of CpG dinucleotides in human gene promoters

Kenneth P. Nephew, Youngik Yang, Sun Kim, 2011, BCB '11.

Antimitogenic and chemosensitizing effects of the methylation inhibitor zebularine in ovarian cancer

Pearlly Yan, Kenneth P. Nephew, K. Nephew, 2005, Molecular Cancer Therapeutics.

Rethinking ovarian cancer: recommendations for improving outcomes

Kenneth P. Nephew, James D. Brenton, Robert C. Bast, 2011, Nature Reviews Cancer.

A Mathematical Model of Bimodal Epigenetic Control of miR-193a in Ovarian Cancer Stem Cells

Michael W. Y. Chan, Kenneth P. Nephew, Baltazar D. Aguda, 2014, PloS one.

Dual regulation by microRNA-200b-3p and microRNA-200b-5p in the inhibition of epithelial-to-mesenchymal transition in triple-negative breast cancer

Kenneth P. Nephew, Matthew E. Burow, Aaron Buechlein, 2015, Oncotarget.

Empirical Bayes Model Comparisons for Differential Methylation Analysis

Kenneth P. Nephew, Mingxiang Teng, Guohua Wang, 2012, Comparative and functional genomics.

Comprehensive methylome analysis of ovarian tumors reveals hedgehog signaling pathway regulators as prognostic DNA methylation biomarkers

Kenneth P. Nephew, Tim Hui-Ming Huang, Hsuan-Cheng Huang, 2013, Epigenetics.

RNA Polymerase II Binding Patterns Reveal Genomic Regions Involved in MicroRNA Gene Regulation

Kenneth P. Nephew, Guohua Wang, Changyu Shen, 2010, PloS one.

Integrated analysis of genome-wide DNA methylation and gene expression profiles in molecular subtypes of breast cancer

Byoung-Tak Zhang, Pearlly Yan, Kenneth P. Nephew, 2013, Nucleic acids research.

Endocrine Disruptor Regulation of MicroRNA Expression in Breast Carcinoma Cells

Kenneth P. Nephew, Meng Li, Matthew E. Burow, 2012, PloS one.

The Influence of cis-Regulatory Elements on DNA Methylation Fidelity

Kenneth P. Nephew, Mingxiang Teng, Lang Li, 2012, PloS one.