Tim Hui-Ming Huang

发表

An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules

Joel H. Saltz, Huaxia Qin, Michael W. Y. Chan, 2009, BMC Systems Biology.

HRTBLDb: an informative data resource for hormone receptors target binding loci

Tim Hui-Ming Huang, Victor X. Jin, Brian A. Kennedy, 2009, Nucleic Acids Res..

Network-based classification of recurrent endometrial cancers using high-throughput DNA methylation data

Tim Hui-Ming Huang, Fei Gu, Jianhua Ruan, 2012, BCB.

A personalized committee classification approach to improving prediction of breast cancer metastasis

Tim Hui-Ming Huang, Jianhua Ruan, Md. Jamiul Jahid, 2014, Bioinform..

An ERα/modulator regulatory network in the breast cancer cells

Yunlong Liu, Kenneth P. Nephew, Tim Hui-Ming Huang, 2011, 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS).

Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands

Pearlly Yan, Tim Hui-Ming Huang, Robert Brown, 2008, BMC Bioinformatics.

A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer

Yadong Wang, Yunlong Liu, Pearlly Yan, 2011, BMC Systems Biology.

Probe signal correction for differential methylation hybridization experiments

Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang, 2008, BMC Bioinformatics.

A dynamic time order network for time-series gene expression data analysis

Yang Xiang, Yunlong Liu, Kenneth P. Nephew, 2012, BMC Systems Biology.

A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha

Wei Zhang, Curtis Balch, Alfred S. L. Cheng, 2006, Bioinform..

Online Microarray Laboratory Information Management System (M-LIMS): Linking Health Informatics and Bioinformatics

Pearlly Yan, Tim Hui-Ming Huang, Adam L. Asare, 2001, AMIA.

A robust unified approach to analyzing methylation and gene expression data

Tim Hui-Ming Huang, Shili Lin, Abbas Khalili, 2009, Comput. Stat. Data Anal..

DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models

Tim Hui-Ming Huang, Shili Lin, Cenny Taslim, 2011, Bioinform..

Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray System

Kenneth P. Nephew, Tim Hui-Ming Huang, Lang Li, 2005, J. Comput. Biol..

Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research

Yunlong Liu, Pearlly Yan, Tim Hui-Ming Huang, 2009, 2009 IEEE International Conference on Bioinformatics and Biomedicine.

Preprocessing differential methylation hybridization microarray data

Pearlly Yan, Tim Hui-Ming Huang, Shili Lin, 2011, BioData Mining.

Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data

Tim Hui-Ming Huang, Fei Gu, Victor X. Jin, 2010, BMC Systems Biology.

Predicting DNA Methylation Susceptibility Using CpG Flanking Sequences

Dong Xu, Kenneth P. Nephew, Tim Hui-Ming Huang, 2007, Pacific Symposium on Biocomputing.

Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq

Francisco J. Agosto-Perez, Louise C. Showe, Tim Hui-Ming Huang, 2010, Nucleic Acids Res..

Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data

Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang, 2007, BMC Bioinformatics.

BIMMER: a novel algorithm for detecting differential DNA methylation regions from MBDCap-seq data

Tim Hui-Ming Huang, Yufei Huang, Yidong Chen, 2014, BMC Bioinformatics.

Genome-Wide DNA Methylation Profiling in 40 Breast Cancer Cell Lines

Tim Hui-Ming Huang, Zhongming Zhao, Leng Han, 2010, ICIC.

MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data

Tim Hui-Ming Huang, Ramana V. Davuluri, Victor X. Jin, 2005, Nucleic Acids Res..

A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments

Tim Hui-Ming Huang, Ümit V. Çatalyürek, Doruk Bozdag, 2009, BICoB.

Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells

Curtis Balch, Kenneth P. Nephew, Tim Hui-Ming Huang, 2008, Bioinform..

Chromatin signature analysis and prediction of genome-wide novel promoters using finite mixture model

Tim Hui-Ming Huang, Kun Huang, Shili Lin, 2011, 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS).

Comparative study on ChIP-seq data: normalization and binding pattern characterization

Pearlly Yan, Tim Hui-Ming Huang, Kun Huang, 2009, Bioinform..

A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data

Lu Tian, Tim Hui-Ming Huang, Raghu Machiraju, 2012, BMC Bioinformatics.

A fuzzy logic rule-based system for chromosome recognition

Paul D. Gader, Ozy Sjahputera, James M. Keller, 1995, Proceedings Eighth IEEE Symposium on Computer-Based Medical Systems.

Identifying differentially methylated genes using mixed effect and generalized least square models

Pearlly Yan, Tim Hui-Ming Huang, Shili Lin, 2009, BMC Bioinformatics.

Comparing Multiple Chip-Sequencing Experiments

Tim Hui-Ming Huang, Kun Huang, Jeffrey D. Parvin, 2011, J. Bioinform. Comput. Biol..

Identifying hypermethylated CpG islands using a quantile regression model

Pearlly Yan, Tim Hui-Ming Huang, Shili Lin, 2011, BMC Bioinformatics.

Expressed CpG island sequence tag microarray for dual screening of DNA hypermethylation and gene silencing in cancer cells.

Tim Hui-Ming Huang, Huidong Shi, Catherine Lofton-Day, 2002, Cancer research.

Differential methylation hybridization using CpG island arrays.

Tim Hui-Ming Huang, Pearlly S Yan, T. Huang, 2002, Methods in molecular biology.

Oligonucleotide‐based microarray for DNA methylation analysis: Principles and applications

Tim Hui-Ming Huang, Huidong Shi, Charles W Caldwell, 2003, Journal of cellular biochemistry.

Downregulation of the tumor-suppressor miR-16 via progestin-mediated oncogenic signaling contributes to breast cancer development

Tim Hui-Ming Huang, Yi-Wen Huang, Martin A Rivas, 2011, Breast Cancer Research.

Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis.

Tim Hui-Ming Huang, Pearlly S Yan, M. Oberley, 2002, Genes & development.

An empirical Bayes model for gene expression and methylation profiles in antiestrogen resistant breast cancer

Tim Hui-Ming Huang, Jaesik Jeong, Changyu Shen, 2010, BMC Medical Genomics.

Chromatin immunoprecipitation microarrays for identification of genes silenced by histone H3 lysine 9 methylation.

Tim Hui-Ming Huang, Pearlly S Yan, J. Issa, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Cross-talk among writers, readers, and erasers of m6A regulates cancer growth and progression

Tim Hui-Ming Huang, Yufei Huang, Zhao Lai, 2018, Science Advances.

Differential distribution of DNA methylation within the RASSF1A CpG island in breast cancer.

Tim Hui-Ming Huang, Huidong Shi, Pearlly S Yan, 2003, Cancer research.

Comprehensive methylome analysis of ovarian tumors reveals hedgehog signaling pathway regulators as prognostic DNA methylation biomarkers

Kenneth P. Nephew, Tim Hui-Ming Huang, Hsuan-Cheng Huang, 2013, Epigenetics.

Methylation microarray analysis of late-stage ovarian carcinomas distinguishes progression-free survival in patients and identifies candidate epigenetic markers.

Tim Hui-Ming Huang, Chi-Ren Shyu, Jaturon Harnsomburana, 2002, Clinical cancer research : an official journal of the American Association for Cancer Research.

Methylation Profiling Identifies Epigenetic Markers for High-grade Gliomas.

Tim Hui-Ming Huang, Pearlly S Yan, O. Wiestler, 2004, Cancer genomics & proteomics.

Methylation target array for rapid analysis of CpG island hypermethylation in multiple tissue genomes.

Tim Hui-Ming Huang, Huidong Shi, Charles W Caldwell, 2003, The American journal of pathology.

Differential Methylation Hybridization Array of Endometrial Cancers Reveals Two Novel Cancer-Specific Methylation Markers

Tim Hui-Ming Huang, Matthew A Powell, Pearlly S Yan, 2007, Clinical Cancer Research.

High-fat or ethinyl-oestradiol intake during pregnancy increases mammary cancer risk in several generations of offspring

Tim Hui-Ming Huang, Leena Hilakivi-Clarke, Yue Wang, 2012, Nature Communications.

Genome-wide DNA methylation analysis reveals estrogen-mediated epigenetic repression of metallothionein-1 gene cluster in breast cancer

Tim Hui-Ming Huang, Zhenqing Ye, Victor X Jin, 2015, Clinical Epigenetics.

Applications of CpG island microarrays for high-throughput analysis of DNA methylation.

Tim Hui-Ming Huang, Huidong Shi, Pearlly S Yan, 2002, The Journal of nutrition.

Triple analysis of the cancer epigenome: an integrated microarray system for assessing gene expression, DNA methylation, and histone acetylation.

Tim Hui-Ming Huang, Huidong Shi, Kenneth P Nephew, 2003, Cancer research.