Leszek Rychlewski

发表

Ligand-Info, Searching for Similar Small Compounds Using Index Profiles

Marcin von Grotthuss, Jakub Pas, Leszek Rychlewski, 2003, Bioinform..

Evaluation of 3D-Jury on CASP7 models

Leszek Rychlewski, László Kaján, L. Rychlewski, 2007, BMC Bioinformatics.

3D-Hit: fast structural comparison of proteins on multicore architectures

Dariusz Plewczynski, Leszek Rychlewski, Maciej Cytowski, 2014, Optim. Lett..

Comparison of proteins based on segments structural similarity.

Dariusz Plewczynski, Jakub Pas, Leszek Rychlewski, 2004, Acta biochimica Polonica.

A study of quality measures for protein threading models

Arne Elofsson, Leszek Rychlewski, Adam Zemla, 2001, BMC Bioinformatics.

mRNA:guanine-N7 cap methyltransferases: identification of novel members of the family, evolutionary analysis, homology modeling, and analysis of sequence-structure-function relationships

Leszek Rychlewski, Marcin Feder, Janusz M. Bujnicki, 2001, BMC Bioinformatics.

Protein Fold-Recognition and Experimental Structure Determination

Leszek Rychlewski, Daniel Fischer, Janusz M. Bujnicki, 2004 .

RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited – bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure

Leszek Rychlewski, Janusz M. Bujnicki, J. Bujnicki, 2002, BMC Bioinformatics.

3D-Fun: predicting enzyme function from structure

Dariusz Plewczynski, Marcin von Grotthuss, Leszek Rychlewski, 2008, Nucleic Acids Res..

The RPSP: Web server for prediction of signal peptides

Dariusz Plewczynski, Leszek Rychlewski, Liisa Holm, 2007 .

Integrated web service for improving alignment quality based on segments comparison

Dariusz Plewczynski, Leszek Rychlewski, Adam Godzik, 2004, BMC Bioinformatics.

ELM: the status of the 2010 eukaryotic linear motif resource

Jakub Pas, Leszek Rychlewski, Aidan Budd, 2009, Nucleic Acids Res..

ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins

Leszek Rychlewski, Peer Bork, Allegra Via, 2003, Nucleic Acids Res..

Three dimensional model of severe acute respiratory syndrome coronavirus helicase ATPase catalytic domain and molecular design of severe acute respiratory syndrome coronavirus helicase inhibitors

Marcin von Grotthuss, Leszek Rychlewski, Marcin Hoffmann, 2006, J. Comput. Aided Mol. Des..

Fold prediction by a hierarchy of sequence, threading, and modeling methods

Leszek Rychlewski, Adam Godzik, ŁUkasz Jaroszwski, 1998, Protein science : a publication of the Protein Society.

HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking

Dariusz Plewczynski, Marcin von Grotthuss, Leszek Rychlewski, 2014, J. Comput. Biol..

MaxSub: an automated measure for the assessment of protein structure prediction quality

Arne Elofsson, Leszek Rychlewski, Daniel Fischer, 2000, Bioinform..

Ligand.Info small-molecule Meta-Database.

Jakub Pas, Leszek Rychlewski, Grzegorz Koczyk, 2004, Combinatorial chemistry & high throughput screening.

ToolShop: prerelease inspections for protein structure prediction servers

Leszek Rychlewski, 2001, Bioinform..

Detailed Mechanism of Squalene Epoxidase Inhibition by Terbinafine

Leszek Rychlewski, Marcin Hoffmann, Krzysztof Ginalski, 2011, J. Chem. Inf. Model..

3D-Jury: A Simple Approach to Improve Protein Structure Predictions

Arne Elofsson, Leszek Rychlewski, Daniel Fischer, 2003, Bioinform..

TOM - Task and Object Management for Grid Clusters

Leszek Rychlewski, Adam Godzik, Lukasz Slabinski, 2007, GCA.

FFAS03: a server for profile–profile sequence alignments

Leszek Rychlewski, Adam Godzik, Jim Zhanwen Li, 2005, Nucleic Acids Res..

Detecting distant homology with Meta-BASIC

Marcin von Grotthuss, Leszek Rychlewski, Nick V. Grishin, 2004, Nucleic Acids Res..

The PDB-Preview database: a repository of in-silico models of 'on-hold' PDB entries

Jakub Pas, Leszek Rychlewski, Daniel Fischer, 2004, Bioinform..

XtalPred: a web server for prediction of protein crystallizability

Leszek Rychlewski, Adam Godzik, Lukasz Jaroszewski, 2007, Bioinform..

Target specific compound identification using a support vector machine.

Dariusz Plewczynski, Leszek Rychlewski, Uwe Koch, 2007, Combinatorial chemistry & high throughput screening.

ORFeus: detection of distant homology using sequence profiles and predicted secondary structure

Marcin von Grotthuss, Jakub Pas, Leszek Rychlewski, 2003, Nucleic Acids Res..

eHiTS-to-VMD Interface Application. The Search for Tyrosine-tRNA Ligase Inhibitors

Leszek Rychlewski, Marcin Hoffmann, Jan Barciszewski, 2007, J. Chem. Inf. Model..

AutoMotif server: prediction of single residue post-translational modifications in proteins

Dariusz Plewczynski, Leszek Rychlewski, Adrian Tkacz, 2005, Bioinform..

Fold-recognition detects an error in the Protein Data Bank

Leszek Rychlewski, Daniel Fischer, Janusz M. Bujnicki, 2002, Bioinform..

VoteDock: Consensus docking method for prediction of protein–ligand interactions

Dariusz Plewczynski, Marcin von Grotthuss, Leszek Rychlewski, 2011, J. Comput. Chem..

3D-Hit: fast structural comparison of proteins.

Leszek Rychlewski, Marcin von Grotthuss, Dariusz M Plewczynski, 2002, Applied bioinformatics.

Detection of reliable and unexpected protein fold predictions using 3D-Jury

Leszek Rychlewski, Krzysztof Ginalski, K. Ginalski, 2003, Nucleic Acids Res..

PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics

Dariusz Plewczynski, Marcin von Grotthuss, Leszek Rychlewski, 2006, BMC Bioinformatics.

Improving the quality of twilight‐zone alignments

Leszek Rychlewski, Adam Godzik, Lukasz Jaroszewski, 2000, Protein science : a publication of the Protein Society.

Virtual high throughput screening using combined random forest and flexible docking.

Dariusz Plewczynski, Leszek Rychlewski, Krzysztof Ginalski, 2009, Combinatorial chemistry & high throughput screening.

Structure prediction meta server

Arne Elofsson, Leszek Rychlewski, Daniel Fischer, 2001, Bioinform..

Sequence analysis and structure prediction of 23S rRNA:m1G methyltransferases reveals a conserved core augmented with a putative Zn-binding domain in the N-terminus and family-specific elaborations in the C-terminus.

Leszek Rychlewski, Janusz M Bujnicki, R. Blumenthal, 2002, Journal of molecular microbiology and biotechnology.

Errors in the D. radiodurans large ribosomal subunit structure detected by protein fold‐recognition and structure validation tools

Leszek Rychlewski, Marcin Feder, Janusz M Bujnicki, 2002, FEBS letters.

In silico identification, structure prediction and phylogenetic analysis of the 2'-O-ribose (cap 1) methyltransferase domain in the large structural protein of ssRNA negative-strand viruses.

Leszek Rychlewski, Janusz M Bujnicki, J. Bujnicki, 2002, Protein engineering.

Fluorescent Cell Chip a new in vitro approach for immunotoxicity screening.

Leszek Rychlewski, Przemysław Biecek, Jarosław Dastych, 2006, Toxicology letters.

The challenge of protein structure determination—lessons from structural genomics

Leszek Rychlewski, Adam Godzik, Ana P. C. Rodrigues, 2007, Protein science : a publication of the Protein Society.

BOF: a novel family of bacterial OB‐fold proteins

Leszek Rychlewski, Nick V Grishin, Krzysztof Ginalski, 2004, FEBS letters.

LigProf: A simple tool for in silico prediction of ligand-binding sites

Leszek Rychlewski, Grzegorz Koczyk, L. Rychlewski, 2007, Journal of molecular modeling.

Target specificity analysis of the Abl kinase using peptide microarray data.

Leszek Rychlewski, Ulf Reimer, Maik Kschischo, 2004, Journal of molecular biology.

Prediction of signal peptides in protein sequences by neural networks.

Dariusz Plewczynski, Leszek Rychlewski, Lukasz Slabinski, 2008, Acta biochimica Polonica.

AutoMotif Server for prediction of phosphorylation sites in proteins using support vector machine: 2007 update

Dariusz Plewczynski, Leszek Rychlewski, Adrian Tkacz, 2008, Journal of molecular modeling.

Protein structure prediction for the male-specific region of the human Y chromosome.

Leszek Rychlewski, Nick V Grishin, David Baker, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Protein domain of unknown function DUF1023 is an α/β hydrolase

Leszek Rychlewski, Nick V. Grishin, Krzysztof Ginalski, 2005 .

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

Leszek Rychlewski, Yves Van de Peer, Jean-Paul Cadoret, 2008, Nature.

LiveBench‐8: The large‐scale, continuous assessment of automated protein structure prediction

Leszek Rychlewski, Daniel Fischer, D. Fischer, 2005, Protein science : a publication of the Protein Society.

A common cis-element in promoters of protein synthesis and cell cycle genes.

Leszek Rychlewski, Marcin Hoffmann, Jerzy Ostrowski, 2007, Acta biochimica Polonica.

mRNA Cap-1 Methyltransferase in the SARS Genome

Leszek Rychlewski, Marcin von Grotthuss, Lucjan S Wyrwicz, 2003, Cell.

Comprehensive Structural and Substrate Specificity Classification of the Saccharomyces cerevisiae Methyltransferome

Leszek Rychlewski, Andrzej Kudlicki, Maga Rowicka, 2011, PloS one.

Application of 3D‐Jury, GRDB, and Verify3D in fold recognition

Jakub Pas, Leszek Rychlewski, Krzysztof Ginalski, 2003, Proteins.

Squalene monooxygenase – a target for hypercholesterolemic therapy

Leszek Rychlewski, Jan Barciszewski, Tomasz Grabarkiewicz, 2011, Biological chemistry.

Anti-HIV-1 activity of 3-deaza-adenosine analogs. Inhibition of S-adenosylhomocysteine hydrolase and nucleotide congeners.

Leszek Rychlewski, Janusz M Bujnicki, Witold R Rudnicki, 2003, European journal of biochemistry.

Ab Initio server prototype for prediction of phosphorylation sites in proteins

Dariusz Plewczynski, Leszek Rychlewski, L. Rychlewski, 2003 .

Heterogeneous Nuclear Ribonucleoprotein K Protein Associates with Multiple Mitochondrial Transcripts within the Organelle*

Leszek Rychlewski, Jerzy Ostrowski, Karol Bomsztyk, 2002, The Journal of Biological Chemistry.

Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily

Leszek Rychlewski, Anna Muszewska, Krzysztof Ginalski, 2012, Nucleic acids research.

Molecular modeling of phosphorylation sites in proteins using a database of local structure segments

Dariusz Plewczynski, Leszek Rychlewski, Andrzej Kloczkowski, 2005, Journal of molecular modeling.

Comprehensive classification of nucleotidyltransferase fold proteins: identification of novel families and their representatives in human

Leszek Rychlewski, Krzysztof Ginalski, Krzysztof Kuchta, 2009, Nucleic acids research.

Protein domain of unknown function DUF1023 is an alpha/beta hydrolase.

Leszek Rychlewski, Nick V Grishin, Krzysztof Ginalski, 2005, Proteins.