Francesco Falciani

发表

Biomarker discovery in microarray gene expression data with Gaussian processes

Wei Chu, Zoubin Ghahramani, Francesco Falciani, 2005, Bioinform..

Towards a System Level Understanding of Non-Model Organisms Sampled from the Environment: A Network Biology Approach

Francesco Falciani, John M. Herbert, Mark R. Viant, 2011, PLoS Comput. Biol..

A Systems Biology Approach Identifies Molecular Networks Defining Skeletal Muscle Abnormalities in Chronic Obstructive Pulmonary Disease

Josep Roca, Francesco Falciani, Stuart Egginton, 2011, PLoS Comput. Biol..

Structure-Based Networks for Drug Validation pdf

Pietro Liò, Francesco Falciani, Catalina Cangea, 2018, ArXiv.

A HIERARCHICAL BAYESIAN MODEL FOR INFERENCE OF COPY NUMBER VARIANTS AND THEIR ASSOCIATION TO GENE EXPRESSION.

Marina Vannucci, Francesco Falciani, Alberto Cassese, 2014, The annals of applied statistics.

A Network Biology Approach Identifies Molecular Cross-Talk between Normal Prostate Epithelial and Prostate Carcinoma Cells

Marina Vannucci, Xiaodong Zhuang, Francesco Falciani, 2016, PLoS Comput. Biol..

DNA Microarrays: a Powerful Genomic Tool for Biomedical and Clinical Research

Francesco Falciani, Victor Trevino, Hugo A. Barrera-Saldaña, 2007, Molecular medicine.

a tool for understanding physiology: A network

Francesco Falciani, Stuart Egginton, Nil Turan, 2017 .

SAERMA: Stacked Autoencoder Rule Mining Algorithm for the Interpretation of Epistatic Interactions in GWAS for Extreme Obesity

Paul Fergus, Denis Reilly, Francesco Falciani, 2020, IEEE Access.

The SOLUTIONS project: challenges and responses for present and future emerging pollutants in land and water resources management.

Helmut Segner, Thomas Backhaus, Rolf Altenburger, 2015, The Science of the total environment.

Microarray Technology Through Applications

Francesco Falciani, 2009 .

Bayesian Variable Selection in Multinomial Probit Models to Identify Molecular Signatures of Disease Stage

Marina Vannucci, Chris Buckley, Francesco Falciani, 2004, Biometrics.

Improving Functional Module Detection

Francesco Falciani, Katrin Sameith, K. J. Abraham, 2009, 2009 Ohio Collaborative Conference on Bioinformatics.

Classical and Bayesian approaches to reconstructing genetic regulatory networks

Zoubin Ghahramani, Matthew J. Beal, Francesco Falciani, 2004 .

Computationally predicted gene regulatory networks in molluscan biomineralization identify extracellular matrix production and ion transportation pathways

Francesco Falciani, Melody S Clark, Victoria A Sleight, 2019, Bioinform..

Functional modules integrating essential cellular functions are predictive of the response of leukaemia cells to DNA damage

Francesco Falciani, Dieter Maier, Nil Turan, 2008, Bioinform..

Chemical hazard prediction and hypothesis testing using quantitative adverse outcome pathways.

Francis J Doyle, Lyle Burgoon, Francesco Falciani, 2019, ALTEX.

A computational framework for gene regulatory network inference that combines multiple methods and datasets

Francesco Falciani, Roy Bicknell, Anna Stincone, 2011, BMC Systems Biology.

ChainRank, a chain prioritisation method for contextualisation of biological networks

David Gomez-Cabrero, Francesco Falciani, Isaac Cano, 2016, BMC Bioinformatics.

COMPADRE: an R and web resource for pathway activity analysis by component decompositions

Francesco Falciani, Victor Trevino, José G. Tamez-Peña, 2012, Bioinform..

Modeling T-cell activation using gene expression profiling and state-space models

Zoubin Ghahramani, Francesco Falciani, David L. Wild, 2004, Bioinform..

A Bayesian approach to reconstructing genetic regulatory networks with hidden factors

Zoubin Ghahramani, Matthew J. Beal, Francesco Falciani, 2005, Bioinform..

Vision of a near future: Bridging the human health-environment divide. Toward an integrated strategy to understand mechanisms across species for chemical safety assessment.

Imran Shah, Andrew White, Francesco Falciani, 2020, Toxicology in vitro : an international journal published in association with BIBRA.

Knowledge management for systems biology a general and visually driven framework applied to translational medicine

Jordi Villà-Freixa, Francesco Falciani, Dieter Maier, 2011, BMC Systems Biology.

GALGO: an R package for multivariate variable selection using genetic algorithms

Francesco Falciani, Victor Trevino, F. Falciani, 2006, Bioinform..

Future water quality monitoring--adapting tools to deal with mixtures of pollutants in water resource management.

Helmut Segner, Thomas Backhaus, Rolf Altenburger, 2015, The Science of the total environment.

Modelling biological responses using gene expression profiling and linear dynamical systems

Zoubin Ghahramani, Francesco Falciani, David L. Wild, 2001 .

Adverse Outcome Pathways for Regulatory Applications: Examination of Four Case Studies With Different Degrees of Completeness and Scientific Confidence.

Francesco Falciani, Geoff Hodges, Dries Knapen, 2015, Toxicological sciences : an official journal of the Society of Toxicology.

The Role of Omics in the Application of Adverse Outcome Pathways for Chemical Risk Assessment

Edward J. Perkins, Francesco Falciani, Andrew Cossins, 2017, Toxicological sciences : an official journal of the Society of Toxicology.

Systems Medicine: from molecular features and models to the clinic in COPD

Jesper Tegnér, Albert-László Barabási, Francesco Marabita, 2014, Journal of Translational Medicine.

Identification and pathway mapping of furan target proteins reveal mitochondrial energy production and redox regulation as critical targets of furan toxicity.

Francesco Falciani, Nil Turan, Wolfgang Dekant, 2012, Toxicological sciences : an official journal of the Society of Toxicology.

Models and computational strategies linking physiological response to molecular networks from large-scale data

Marina Vannucci, Francesco Falciani, Victor Trevino, 2008, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

Muscle and blood redox status after exercise training in severe COPD patients.

Josep Roca, Francesco Falciani, Marta Cascante, 2012, Free radical biology & medicine.

Mapping Drug Physico-Chemical Features to Pathway Activity Reveals Molecular Networks Linked to Toxicity Outcome

Francesco Falciani, Philipp Antczak, Fernando Ortega, 2010, PloS one.

Analysis of host response to bacterial infection using error model based gene expression microarray experiments

Francesco Falciani, Mark J. Pallen, Victor Trevino, 2005, Nucleic acids research.

Germinal center B cells govern their own fate via antibody feedback

Michael Meyer-Hermann, Francesco Falciani, Yang Zhang, 2013, The Journal of experimental medicine.

The COPD Knowledge Base: enabling data analysis and computational simulation in translational COPD research

David Gomez-Cabrero, Josep Roca, Francesco Falciani, 2014, Journal of Translational Medicine.

Multilevel functional genomics data integration as a tool for understanding physiology: a network biology perspective.

Francesco Falciani, Stuart Egginton, Nil Turan, 2016, Journal of applied physiology.

Genomic and transcriptomic predictors of triglyceride response to regular exercise

Claude Bouchard, Francesco Falciani, Yun Ju Sung, 2015, British Journal of Sports Medicine.

Chronic Obstructive Pulmonary Disease heterogeneity: challenges for health risk assessment, stratification and management

Jesper Tegnér, David Gomez-Cabrero, Josep Roca, 2014, Journal of Translational Medicine.

Reverse engineering adverse outcome pathways

Stephen W. Edwards, Francesco Falciani, Ronald Taylor, 2011, Environmental toxicology and chemistry.

A systems biology approach reveals a link between systemic cytokines and skeletal muscle energy metabolism in a rodent smoking model and human COPD

Josep Roca, Francesco Falciani, Stuart Egginton, 2014, Genome Medicine.

A systems biology approach sheds new light on Escherichia coli acid resistance

Francesco Falciani, Anna Stincone, Matthew D. Johnson, 2011, Nucleic acids research.

Supplementary Material for the paper : GALGO : An R Package For Multivariate Variable Selec tion Using Genetic Algorithms

Francesco Falciani, Victor Trevino, F. Falciani, 2006 .

Hepatic transcriptomic and metabolomic responses in the Stickleback (Gasterosteus aculeatus) exposed to ethinyl-estradiol.

Paul Baker, Francesco Falciani, Huifeng Wu, 2010, Aquatic toxicology.

Discovery of metabolic signatures for predicting whole organism toxicology.

Francesco Falciani, Mark R Viant, Adam Hines, 2010, Toxicological sciences : an official journal of the Society of Toxicology.

Freshwater Conservation and Biomonitoring of Structure and Function: Genes to Ecosystems

Francesco Falciani, Don Monteith, Guy Woodward, 2015 .

Inference of Low and High-Grade Glioma Gene Regulatory Networks Delineates the Role of Rnd3 in Establishing Multiple Hallmarks of Cancer

Shan He, Francesco Falciani, Nil Turan, 2015, PLoS genetics.

Integrating Omic Technologies into Aquatic Ecological Risk Assessment and Environmental Monitoring: Hurdles, Achievements, and Future Outlook

William H. Benson, Francesco Falciani, Nancy D. Denslow, 2009, Environmental health perspectives.

Deletion of Hexose-6-phosphate Dehydrogenase Activates the Unfolded Protein Response Pathway and Induces Skeletal Myopathy*

Francesco Falciani, Nil Turan, F. Falciani, 2008, Journal of Biological Chemistry.