Manabu Torii

发表

Classification Systems for Bacterial Protein-Protein Interaction Document Retrieval

Hongfang Liu, Manabu Torii, Guixian Xu, 2010, Int. J. Comput. Model. Algorithms Medicine.

dbOGAP - An Integrated Bioinformatics Resource for Protein O-GlcNAcylation

Hongfang Liu, Manabu Torii, Zhang-Zhi Hu, 2011, BMC Bioinformatics.

Pooling annotated corpora for clinical concept extraction

Siddhartha Jonnalagadda, Hongfang Liu, Manabu Torii, 2013, J. Biomed. Semant..

SORTAL ANAPHORA RESOLUTION IN MEDLINE ABSTRACTS

Manabu Torii, K. Vijay-Shanker, K. Vijay-Shanker, 2007, Comput. Intell..

Using name-internal and contextual features to classify biological terms

Manabu Torii, K. Vijay-Shanker, Sachin Kamboj, 2004, J. Biomed. Informatics.

A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems

Yifan Peng, Manabu Torii, Cathy H. Wu, 2014, BMC Bioinformatics.

Human gene/protein synonym dictionary from WikiLinks

Hongfang Liu, Manabu Torii, Kavishwar B. Wagholikar, 2011, BCB '11.

Headwords and Suffixes in Biomedical Names

Hongfang Liu, Manabu Torii, Manabu Torii, 2006, KDLL.

Using machine learning for concept extraction on clinical documents from multiple data sources

Hongfang Liu, Manabu Torii, Kavishwar B. Wagholikar, 2011, J. Am. Medical Informatics Assoc..

The gene normalization task in BioCreative III

Zhiyong Lu, Karin M. Verspoor, Hongfang Liu, 2011, BMC Bioinformatics.

An Investigation of Various Information Sources for Classifying Biological names

Manabu Torii, K. Vijay-Shanker, Sachin Kamboj, 2003, BioNLP@ACL.

Research Paper: Quantitative Assessment of Dictionary-based Protein Named Entity Tagging

Hongfang Liu, Carol Friedman, Manabu Torii, 2006, J. Am. Medical Informatics Assoc..

Learning from positive and unlabeled documents for automated detection of alternative splicing sentences in medline abstracts

Hongfang Liu, Chang-Tien Lu, Manabu Torii, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Risk factor detection for heart disease by applying text analytics in electronic medical records

Manabu Torii, Yang Huang, Daniel Zisook, 2015, J. Biomed. Informatics.

Document Classification for Mining Host Pathogen Protein-Protein Interactions

Hongfang Liu, Manabu Torii, Guixian Xu, 2008, 2008 IEEE International Conference on Bioinformatics and Biomedicine.

Using Natural Language Processing to Extract Health-Related Causality from Twitter Messages

Son Doan, Manabu Torii, Sameer Tilak, 2018, 2018 IEEE International Conference on Healthcare Informatics Workshop (ICHI-W).

Stability of steepest descent with momentum for quadratic functions

Manabu Torii, Martin T. Hagan, M. Hagan, 2002, IEEE Trans. Neural Networks.

An exploratory study of news article clustering for web-based bio-surveillance

Hongfang Liu, Manabu Torii, Thang Nguyen, 2010, IHI.

An exploratory study of a text classification framework for Internet-based surveillance of emerging epidemics

Hongfang Liu, Manabu Torii, Lanlan Yin, 2011, Int. J. Medical Informatics.

An online literature mining tool for protein phosphorylation

K. E. Ravikumar, Manabu Torii, Zhang-Zhi Hu, 2006, Bioinform..

Support Vector Machine-Based Mucin-Type O-linked Glycosylation Site Prediction Using Enhanced Sequence Feature Encoding

Hongfang Liu, Manabu Torii, Zhang-Zhi Hu, 2009, AMIA.

Building Domain-Specific Taggers without Annotated (Domain) Data

Manabu Torii, K. Vijay-Shanker, John E. Miller, 2007, EMNLP.

Document Classification for Mining Host Pathogen Protein-Protein Interactions

Hongfang Liu, Manabu Torii, Guixian Xu, 2008, 2008 IEEE International Conference on Bioinformatics and Biomedicine.

BioTagger-GM: a gene/protein name recognition system.

Hongfang Liu, Manabu Torii, Zhang-Zhi Hu, 2009, Journal of the American Medical Informatics Association : JAMIA.

Coreference analysis in clinical notes: a multi-pass sieve with alternate anaphora resolution modules

Siddhartha Jonnalagadda, Hongfang Liu, Manabu Torii, 2012, J. Am. Medical Informatics Assoc..

Learning from Positive and Unlabeled Documents for Retrieval of Bacterial Protein-Protein Interaction Literature

Hongfang Liu, Manabu Torii, Guixian Xu, 2009, BioLINK@ISMB/ECCB.

A comparison study on algorithms of detecting long forms for short forms in biomedical text

Hongfang Liu, Min Song, Manabu Torii, 2007, BMC Bioinformatics.

Building a classifier for identifying sentences pertaining to disease-drug relationships in tardive dyskinesia

Peter B. McGarvey, Manabu Torii, Hagit Shatkay, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine.

An Image-Text Approach for Extracting Experimental Evidence of Protein-Protein Interactions in the Biomedical Literature

Manabu Torii, Cathy H. Wu, Cecilia N. Arighi, 2013, BCB.

A comparison study of biomedical short form definition detection algorithms

Hongfang Liu, Manabu Torii, Cathy H. Wu, 2006, TMBIO '06.

iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system

Yifan Peng, Manabu Torii, Cathy H. Wu, 2014, Database J. Biol. Databases Curation.

Rapid Adaptation of POS Tagging for Domain Specific Uses pdf

Manabu Torii, K. Vijay-Shanker, Michael Bloodgood, 2006, BioNLP@NAACL-HLT.

Using Unlabeled MEDLINE Abstracts for Biological Named Entity Classification

Manabu Torii, K. Vijay-Shanker, 2002 .

Extracting health-related causality from twitter messages using natural language processing

Son Doan, Manabu Torii, Daniel Zisook, 2019, BMC Medical Informatics and Decision Making.

Mapping Gene/Protein Names in Free Text to Biomedical Databases

Hongfang Liu, Manabu Torii, Zhang-Zhi Hu, 2007, Seventh IEEE International Conference on Data Mining Workshops (ICDMW 2007).

A Preliminary Study of Clinical Concept Detection Using Syntactic Relations

Son Doan, Manabu Torii, Elly W. Yang, 2018, AMIA.

Investigation of term classification with applications to sortal anaphora resolution in the biology domain

Manabu Torii, Vijay K. Shanker, 2006 .

Enhancing Acronym/Abbreviation Knowledge Bases with Semantic Information

Hongfang Liu, Manabu Torii, 2007, AMIA.

Pathway curation: Application of text-mining tools eGIFT and RLIMS-P

Manabu Torii, Cathy H. Wu, Peter D'Eustachio, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops.

A framework for biomedical figure segmentation towards image-based document retrieval

Manabu Torii, Cathy H. Wu, Cecilia N. Arighi, 2013, BMC Systems Biology.

Evaluating gene/protein name tagging and mapping for article retrieval

Hongfang Liu, Manabu Torii, Zhang-Zhi Hu, 2010, Semantic Mining in Biomedicine.

Classifier Ensemble for Biomedical Document Retrieval

Hongfang Liu, Manabu Torii, Manabu Torii, 2007, LBM.

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information

Manabu Torii, Cathy H. Wu, Cecilia N. Arighi, 2014, Database J. Biol. Databases Curation.

Detecting concept mentions in biomedical text using hidden Markov model: multiple concept types at once or one at a time?

Hongfang Liu, Manabu Torii, Kavishwar B. Wagholikar, 2014, J. Biomed. Semant..

Supplementing the UMLS with Acronym/Abbreviation Knowledge for Natural Language Processing Applications

Manabu Torii, Hongfang Liu, 2007 .

iSimp: A sentence simplification system for biomedicail text

Yifan Peng, Manabu Torii, Cathy H. Wu, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine.

Adaptation of POS Tagging for Multiple BioMedical Domains

Manabu Torii, K. Vijay-Shanker, John E. Miller, 2007, BioNLP@ACL.

Finding Difficult-to-Disambiguate Words: Towards an Efficient Workflow to Implement Word Sense Disambiguation

Manabu Torii, Daniel Zisook, Jung-Wei Fan, 2015, 2015 International Conference on Healthcare Informatics.

Feasibility of Real-Time Satisfaction Surveys Through Automated Analysis of Patients' Unstructured Comments and Sentiments

Manabu Torii, Farrokh Alemi, David C Aron, 2012, Quality management in health care.

A Hybrid Approach to Sentiment Sentence Classification in Suicide Notes

Manabu Torii, Dingcheng Li, Sunghwan Sohn, 2012, Biomedical informatics insights.

Enhancing the Interoperability of iSimp by Using the BioC Format

Manabu Torii, Cathy H. Wu, Catalina O. Tudor, 2013 .

Mining Health-Related Issues in Consumer Product Reviews by Using Scalable Text Analytics

Son Doan, Manabu Torii, Jung-wei Fan, 2016, Biomedical informatics insights.