Paul Stapor

Mini-batch optimization enables training of ODE models on large-scale datasets

Paul Stapor, Leonard Schmiester, Christoph Wierling, 2019, Nature Communications.

Supplementary data to *Benchmarking of numerical integration methods for ODE models of biological systems*

Paul Stapor, Leonard Schmiester, Jan Hasenauer, 2020 .

Optimization and uncertainty analysis of ODE models using 2nd order adjoint sensitivity analysis

Jan Hasenauer, Paul Stapor, Fabian Froehlich, 2018, bioRxiv.

Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology

Jan Hasenauer, Paul Stapor, Yannik Schälte, 2018 .

Challenges in the calibration of large-scale ordinary differential equation models

Paul Stapor, Jan Hasenauer, Eva-Maria Kapfer, 2019, bioRxiv.

PESTO: Parameter EStimation TOolbox

Jan Hasenauer, Paul Stapor, Daniel Weindl, 2017, Bioinform..

Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis

Jan Hasenauer, Paul Stapor, Fabian Fröhlich, 2018, Bioinform..