Julio Vera

发表

Supervised Cluster Analysis of miRNA Expression Data Using Rough Hypercuboid Partition Matrix

Sushmita Paul, Julio Vera, Sushmita Paul, 2015, PReMI.

A multi-level model accounting for the effects of JAK2-STAT5 signal modulation in erythropoiesis

Olaf Wolkenhauer, Julio Vera, Xin Lai, 2009, Comput. Biol. Chem..

Personalized cancer immunotherapy using Systems Medicine approaches

Olaf Wolkenhauer, Julio Vera, Gerold Schuler, 2016, Briefings Bioinform..

Non-coding RNA detection methods combined to improve usability, reproducibility and precision

Olaf Wolkenhauer, Julio Vera, Ulf Schmitz, 2010, BMC Bioinformatics.

Network- and systems-based re-engineering of dendritic cells with non-coding RNAs for cancer immunotherapy

Julio Vera, Xin Lai, Florian S. Dreyer, 2021, Theranostics.

The RNA world in the 21st century - a systems approach to finding non-coding keys to clinical questions

Olaf Wolkenhauer, Julio Vera, Shailendra K. Gupta, 2016, Briefings Bioinform..

Editorial: Foundations of Theoretical Approaches in Systems Biology

Alberto Marin-Sanguino, Rui Alves, Julio Vera, 2018, Front. Genet..

Hierarchical Levels of Biological Systems and their Integration as a Principal Cause for Tumour Occurrence.

Julio Vera, Svetoslav Nikolov, Assen Dimitrov, 2019, Nonlinear dynamics, psychology, and life sciences.

Optimization of biochemical systems through mathematical programming: Methods and applications

Julio Vera, Carlos González-Alcón, Néstor V. Torres, 2010, Comput. Oper. Res..

Dynamics of receptor and protein transducer homodimerisation

Olaf Wolkenhauer, Julio Vera, Walter Kolch, 2008, BMC Systems Biology.

Boolean Networks: A Primer

Julio Vera, Martina Cantone, Giorgio Bertolazzi, 2021, Systems Medicine.

A model-based strategy to investigate the role of microRNA regulation in cancer signalling networks

Olaf Wolkenhauer, Julio Vera, Svetoslav Nikolov, 2011, Theory in Biosciences.

Dynamic properties of a delayed protein cross talk model

Olaf Wolkenhauer, Julio Vera, Svetoslav Nikolov, 2008, Biosyst..

Integration of sensitivity and bifurcation analysis to detect critical processes in a model combining signalling and cell population dynamics

Olaf Wolkenhauer, Julio Vera, Xin Lai, 2010, Int. J. Syst. Sci..

Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine

Paolo Tieri, Filippo Castiglione, Derek Groen, 2017, Briefings Bioinform..

An integrative network-driven pipeline for systematic identification of lncRNA-associated regulatory network motifs in metastatic melanoma

Olaf Wolkenhauer, Julio Vera, Martin Eberhardt, 2020, BMC Bioinformatics.

A systems biology approach to analyse amplification in the JAK2-STAT5 signalling pathway

Olaf Wolkenhauer, Ursula Klingmüller, Jens Timmer, 2008, BMC Systems Biology.

Detection of potential enzyme targets by metabolic modelling and optimization: Application to a simple enzymopathy

Julio Vera, Marta Cascante, Néstor V. Torres, 2007, Bioinform..

MetMAP: An integrated Matlab TM package for analysis and optimization of metabolic systems

Julio Vera, Néstor V. Torres, N. Torres, 2003, Silico Biol..

Multi-objective steady state optimization of biochemical reaction networks using a constrained genetic algorithm

Julio Vera, Ezequiel Franco-Lara, Dirk Weuster-Botz, 2008, Comput. Chem. Eng..

Exploration of homodimer receptor: homodimer protein interactions

Olaf Wolkenhauer, Julio Vera, Walter Kolch, 2009, Int. J. Bioinform. Res. Appl..

Exosomal lncRNAs and cancer: connecting the missing links

Julio Vera, Xin Lai, Hojjat Naderi-Meshkin, 2018, Bioinform..

SBML export interface for the systems biology toolbox for MATLAB

Olaf Wolkenhauer, Julio Vera, Henning Schmidt, 2007, Bioinform..

PLMaddon: a power-law module for the MatlabTM SBToolbox

Olaf Wolkenhauer, Cheng Sun, Julio Vera, 2007, Bioinform..

Can Gamification Contribute to Computer Modeling-Driven Biomedical Research?

Julio Vera, Julio Vera, Guido Santos, 2018, Front. Physiol..

The Biosurveillance Analytics Resource Directory (BARD): Facilitating the Use of Epidemiological Models for Infectious Disease Surveillance

Alessandro Vespignani, Carmen M. Pancerella, Arvind Ramanathan, 2016, PloS one.

Model-Based Phenotypic Signatures Governing the Dynamics of the Stem and Semi-differentiated Cell Populations in Dysplastic Colonic Crypts

Olaf Wolkenhauer, Julio Vera, Guido Santos, 2017, Bulletin of Mathematical Biology.

Cooperative gene regulation by microRNA pairs and their identification using a computational workflow

Olaf Wolkenhauer, Julio Vera, Xin Lai, 2014, Nucleic acids research.

Dynamical effects of epigenetic silencing of 14-3-3sigma expression.

Olaf Wolkenhauer, Julio Vera, Manfred Kunz, 2009, Molecular bioSystems.

An Interactive Macrophage Signal Transduction Map Facilitates Comparative Analyses of High-Throughput Data

Julio Vera, Florian S. Dreyer, Martina Cantone, 2017, The Journal of Immunology.

Innate extracellular vesicles from melanoma patients suppress β-catenin in tumor cells by miRNA-34a

Julio Vera, Xin Lai, Martin Eberhardt, 2019, Life Science Alliance.

THP-1-derived macrophages render lung epithelial cells hypo-responsive to Legionella pneumophila – a systems biology study

Julio Vera, Xin Lai, Stefan Hippenstiel, 2017, Scientific Reports.

A systems biology approach to analyse amplification in the JAK 2-STAT 5 signalling pathway

Olaf Wolkenhauer, Ursula Klingmüller, Jens Timmer, 2008 .

Investigating dynamics of inhibitory and feedback loops in ERK signalling using power-law models.

Eva Balsa-Canto, Olaf Wolkenhauer, Julio Vera, 2010, Molecular bioSystems.

Third-Kind Encounters in Biomedicine: Immunology Meets Mathematics and Informatics to Become Quantitative and Predictive.

Julio Vera, Xin Lai, Martin Eberhardt, 2016, Methods in molecular biology.

Systems biology and bioinformatics in aging research: a workshop report.

Dietrich Rebholz-Schuhmann, Axel Kowald, Steffen Priebe, 2012, Rejuvenation research.

Chaos in a delayed protein cross talk model with periodic forcing

Olaf Wolkenhauer, Julio Vera, Svetoslav Nikolov, 2007 .

Locally renewing resident synovial macrophages provide a protective barrier for the joint

Friedrich Paulsen, Andrés Hidalgo, Julio Vera, 2019, Nature.

MiR-205-5p and miR-342-3p cooperate in the repression of the E2F1 transcription factor in the context of anticancer chemotherapy resistance

Olaf Wolkenhauer, Julio Vera, Xin Lai, 2018, Theranostics.

Context Sensitive Modeling of Cancer Drug Sensitivity

Julio Vera, Lyle Ungar, Bo-Juen Chen, 2015, PloS one.

Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs

Olaf Wolkenhauer, Julio Vera, Xin Lai, 2012, Nucleic acids research.

Whither systems medicine?

Ingo Roeder, Olaf Wolkenhauer, Nils Blüthgen, 2018, Experimental & Molecular Medicine.

Bacterial Adherence and Dwelling Probability: Two Drivers of Early Alveolar Infection by Streptococcus pneumoniae Identified in Multi-Level Mathematical Modeling

Julio Vera, Guido Santos, Martin Eberhardt, 2018, Front. Cell. Infect. Microbiol..

Understanding microRNA-mediated gene regulatory networks through mathematical modelling

Olaf Wolkenhauer, Julio Vera, Xin Lai, 2016, Nucleic acids research.

Systems biology of JAK-STAT signalling in human malignancies.

Olaf Wolkenhauer, Julio Vera, Katja Rateitschak, 2011, Progress in biophysics and molecular biology.

Model-based genotype-phenotype mapping used to investigate gene signatures of immune sensitivity and resistance in melanoma micrometastasis

Sushmita Paul, Julio Vera, Guido Santos, 2016, Scientific Reports.

A system biology approach to understand functional activity of cell communication systems.

Olaf Wolkenhauer, Julio Vera, O. Wolkenhauer, 2008, Methods in cell biology.

Systems biologists seek fuller integration of systems biology approaches in new cancer research programs.

Olaf Wolkenhauer, Nils Blüthgen, Charles Auffray, 2010, Cancer research.

Power-law models of signal transduction pathways.

Eva Balsa-Canto, Olaf Wolkenhauer, Julio Vera, 2007, Cellular signalling.

Analysis of cell adhesion during early stages of colon cancer based on an extended multi-valued logic approach.

Olaf Wolkenhauer, Julio Vera, Ulf Schmitz, 2012, Molecular bioSystems.