Katherine H. Huang

发表

ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage

Libusha Kelly, Katherine H. Huang, Huiming Ding, 2011, Nucleic Acids Res..

The impact of rare variation on gene expression across tissues

Gao Wang, Mary Goldman, Brian Craft, 2016, Nature.

The Evolution of Two-Component Systems in Bacteria Reveals Different Strategies for Niche Adaptation

Adam P. Arkin, Katherine H. Huang, Eric J. Alm, 2006, PLoS Comput. Biol..

MicrobesOnline: an integrated portal for comparative and functional genomics

Inna Dubchak, Adam P. Arkin, Katherine H. Huang, 2009, Nucleic Acids Res..

A framework for human microbiome research

Katherine H. Huang, Daniel D. Sommer, Zhengyuan O. Wang, 2012, Nature.

A Quantitative Proteome Map of the Human Body

Christopher D. Brown, Katherine H. Huang, Christopher M. Lee, 2019, Cell.

Global Transcriptional, Physiological, and Metabolite Analyses of the Responses of Desulfovibrio vulgaris Hildenborough to Salt Adaptation

Katherine H. Huang, Christopher L. Hemme, J. Keasling, 2009, Applied and Environmental Microbiology.

The MicrobesOnline Web site for comparative genomics.

Katherine H. Huang, Eric J Alm, Adam P Arkin, 2005, Genome research.

Structure, Function and Diversity of the Healthy Human Microbiome

Katherine H. Huang, Daniel D. Sommer, Zhengyuan O. Wang, 2012, Nature.

Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78

Katherine H. Huang, J. Chapman, N. Putnam, 2004, Nature Biotechnology.

Host genetic variation impacts microbiome composition across human body sites

Katherine H. Huang, T. Spector, J. Bell, 2015, Genome Biology.

A novel method for accurate operon predictions in all sequenced prokaryotes

Katherine H. Huang, A. Arkin, M. Price, 2005, Nucleic acids research.

The GTEx Consortium atlas of genetic regulatory effects across human tissues

Christopher D. Brown, Katherine H. Huang, Jared L. Nedzel, 2019, Science.

The Human Microbiome Project: A Community Resource for the Healthy Human Microbiome

Katherine H. Huang, B. Birren, C. Huttenhower, 2012, PLoS biology.

Operon formation is driven by co-regulation and not by horizontal gene transfer.

Katherine H. Huang, A. Arkin, M. Price, 2005, Genome research.

Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus

Feng Chen, Katherine H. Huang, Alla Lapidus, 2007, PLoS genetics.

Identifying personal microbiomes using metagenomic codes

Katherine H. Huang, Curtis Huttenhower, Eric A Franzosa, 2015, Proceedings of the National Academy of Sciences.

Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning

Katherine H. Huang, Eric J Alm, Brian Cleary, 2015, Nature Biotechnology.

Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris

Adam P. Arkin, Katherine H. Huang, Eric J. Alm, 2010 .

Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics

Mary Goldman, Brian Craft, Jingchun Zhu, 2016, Nature Communications.

Energetic Consequences of Nitrite Stress in Desulfovibrio vulgaris Hildenborough, Inferred from Global Transcriptional Analysis

Adam P. Arkin, Katherine H. Huang, Eric J. Alm, 2006, Applied and Environmental Microbiology.

Simulated fiddler-crab sediment mixing

Katherine H. Huang, D. Reed, B. Boudreau, 2007 .

Geochemical analysis of thermal fluids from southern Mount Meager, British Columbia, Canada

Katherine H. Huang, 2019 .

Response of Desulfovibrio vulgaris to Alkaline Stress

Adam P. Arkin, Katherine H. Huang, Qiang He, 2007, Journal of bacteriology.

Transmission of human-associated microbiota along family and social networks

Katherine H. Huang, D. Gevers, Terrance P. Shea, 2019, Nature Microbiology.

VIMSS Computational Core: Comparative Analysis of Regulatory Systems in Environmental Microbes

Katherine H. Huang, I-Min A. Dubchak, E. Alm, 2006 .

Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria

Katherine H. Huang, S. Chisholm, L. Kelly, 2010, Proceedings of the National Academy of Sciences.

Salt Stress in Desulfovibrio vulgaris Hildenborough : an Integrated Genomics Approach

Adam P. Arkin, Katherine H. Huang, Eric J. Alm, 2006 .

Cellular Response of Shewanella oneidensis to Strontium Stress

Katherine H. Huang, Dorothea K. Thompson, A. Arkin, 2006, Applied and Environmental Microbiology.

Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease

Christopher D. Brown, Katherine H. Huang, Christopher M. Lee, 2021, Cell.

Host genetic variation impacts microbiome composition across human body sites

Katherine H. Huang, T. Spector, J. Bell, 2015, Genome Biology.

A Quantitative Proteome Map of the Human Body

Christopher D. Brown, Katherine H. Huang, Christopher M. Lee, 2019, Cell.

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

Katherine H. Huang, Jonathan Livny, Jacques Izard, 2012, Genome Biology.

Transmission of human-associated microbiota along family and social networks

Katherine H. Huang, D. Gevers, E. Alm, 2019, Nature Microbiology.

Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability

Katherine H. Huang, S. Chisholm, M. Saito, 2011, The ISME Journal.

Title : Transcriptome response of high-and low-light adapted Prochlorococcus strains to changing iron availability Running title : Prochlorococcus response to iron stress 5 10 Contributors :

Katherine H. Huang, S. Chisholm, M. Saito, 2011 .

Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism.

Katherine H. Huang, Luke R. Thompson, S. Chisholm, 2011, Proceedings of the National Academy of Sciences of the United States of America.

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

Katherine H. Huang, Luke R Thompson, Luke R. Thompson, 2010, Environmental microbiology.

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

Katherine H. Huang, B. Haas, J. Levin, 2012, Genome Biology.

SARS-CoV-2 RNA concentrations in wastewater foreshadow dynamics and clinical presentation of new COVID-19 cases

Katherine H. Huang, Joshua A. Tucker, Richard Bonneau, 2021, Science of The Total Environment.

MetaRef: a pan-genomic database for comparative and community microbial genomics

Arthur Brady, Curtis Huttenhower, Owen White, 2013, Nucleic Acids Res..

The Virtual Institute of Microbial Stress and Survival : An Overview of the Environmental Stress Pathway Project

Yinjie J. Tang, Katherine H. Huang, Sharon, 2007 .

Wastewater surveillance of SARS-CoV-2 across 40 U.S. states from February to June 2020

Katherine H. Huang, S. Wuertz, W. Hanage, 2021, Water Research.

Transcriptome Profiling of Shewanella oneidensis Gene Expression following Exposure to Acidic and Alkaline pH

Katherine H. Huang, Dorothea K. Thompson, A. Arkin, 2006, Journal of bacteriology.

Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent

Katherine H. Huang, Huiming Ding, S. Chisholm, 2013, The ISME Journal.

Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent

Katherine H. Huang, Huiming Ding, Huiming Ding, 2013, The ISME Journal.

Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis

Katherine H. Huang, Sébastien Rodrigue, S. Chisholm, 2012, The ISME Journal.

Transient tracer dynamics in a lattice-automaton model of bioturbation

Katherine H. Huang, D. Reed, B. Boudreau, 2007 .

UV hyper-resistance in Prochlorococcus MED4 results from a single base pair deletion just upstream of an operon encoding nudix hydrolase and photolyase

Katherine H. Huang, S. Chisholm, L. Kelly, 2010, Environmental microbiology.

Salt Stress in Desulfovibrio vulgaris Hildenborough : an Integrated Genomics Approach

Katherine H. Huang, Alyssa M. Redding, J. Keasling, 2006 .

Comparative genomics of the lactic acid bacteria

Katherine H. Huang, N. V. Pavlova, E. Koonin, 2006, Proceedings of the National Academy of Sciences.

Temporal Transcriptomic Analysis as Desulfovibrio vulgaris Hildenborough Transitions into Stationary Phase during Electron Donor Depletion

Katherine H. Huang, A. Arkin, Jizhong Zhou, 2005, Applied and Environmental Microbiology.

Global Analysis of Heat Shock Response in Desulfovibrio vulgaris Hildenborough

Katherine H. Huang, T. C. Hazen, A. P. Arkin, 2006, Journal of bacteriology.

Salt Stress in Desulfovibrio vulgaris Hildenborough : an Integrated Genomics Approach

Katherine H. Huang, Alyssa M. Redding, J. Keasling, 2006 .

Salt Stress in Desulfovibrio vulgaris Hildenborough: an Integrated Genomics Approach

Katherine H. Huang, Alyssa M. Redding, J. Keasling, 2005, Journal of bacteriology.

Corrigendum: Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78

Katherine H. Huang, J. Chapman, N. Putnam, 2004, Nature Biotechnology.

Analysis of a Ferric Uptake Regulator (Fur) Mutant of Desulfovibrio vulgaris Hildenborough

Katherine H. Huang, Christopher L. Hemme, A. Arkin, 2007, Applied and Environmental Microbiology.

The MicrobesOnline Web site for comparative genomics.

Katherine H. Huang, A. Arkin, I. Dubchak, 2005, Genome research.