Kimmen Sjölander

发表

Functional Classification Using Phylogenomic Inference

Duncan P. Brown, Kimmen Sjölander, K. Sjölander, 2006, PLoS Comput. Biol..

INTREPID: a web server for prediction of functionally important residues by evolutionary analysis

Kimmen Sjölander, Sriram Sankararaman, Bryan Kolaczkowski, 2009, Nucleic Acids Res..

Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis

Kimmen Sjölander, Jake Gunn Glanville, Dan Kirshner, 2007, Nucleic Acids Res..

Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families

David Haussler, Anders Krogh, Michael Brown, 1993, ISMB.

INTREPID—INformation-theoretic TREe traversal for Protein functional site IDentification

Kimmen Sjölander, Sriram Sankararaman, K. Sjölander, 2008, Bioinform..

Active site prediction using evolutionary and structural information

Michael I. Jordan, Fei Sha, Kimmen Sjölander, 2010, Bioinform..

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology

David Haussler, Anders Krogh, Michael Brown, 1996, Comput. Appl. Biosci..

Berkeley PHOG: PhyloFacts orthology group prediction web server

Kimmen Sjölander, Ruchira S. Datta, Christopher Meacham, 2009, Nucleic Acids Res..

Phylogenetic Inference in Protein Superfamilies: Analysis of SH2 Domains

Kimmen Sjölander, K. Sjölander, Kimmen Sjölander, 1998, ISMB.

SATCHMO: Sequence Alignment and Tree Construction Using Hidden Markov Models

Kimmen Sjölander, Robert C. Edgar, R. Edgar, 2003, Bioinform..

Ortholog identification in the presence of domain architecture rearrangement

Kimmen Sjölander, Ruchira S. Datta, Yaoqing Shen, 2011, Briefings Bioinform..

DOE Joint Genome Institute Strategic Planning for the Genomic Sciences. Report from the May 30–31, 2012, Workshop

Jim K. Fredrickson, Kimmen Sjölander, Michael T. Laub, 2012 .

Simultaneous Sequence Alignment and Tree Construction Using Hidden Markov Models

Kimmen Sjölander, Robert C. Edgar, Kimmen Sjölander, 2002, Pacific Symposium on Biocomputing.

Recent Methods for RNA Modeling Using Stochastic Context-Free Grammars

David Haussler, Michael Brown, Kimmen Sjölander, 1994, CPM.

A comparison of scoring functions for protein sequence profile alignment

Kimmen Sjölander, Robert C. Edgar, R. Edgar, 2004, Bioinform..

SATCHMO-JS: a webserver for simultaneous protein multiple sequence alignment and phylogenetic tree construction

John R. Davidson, Kimmen Sjölander, Ruchira S. Datta, 2010, Nucleic Acids Res..

ResBoost: characterizing and predicting catalytic residues in enzymes

Yoav Freund, Ron Alterovitz, Kimmen Sjölander, 2009, BMC Bioinformatics.

Phylogenomic Databases and Orthology Prediction

Kimmen Sjölander, 2013 .

Automated Protein Subfamily Identification and Classification

Duncan P. Brown, Kimmen Sjölander, Nandini Krishnamurthy, 2007, PLoS Comput. Biol..

COACH : profile-profile alignment of protein families using hidden Markov models

Kimmen Sjölander, Robert C. Edgar, R. Edgar, 2003 .

Subfamily HMMS in Functional Genomics

Duncan P. Brown, Kimmen Sjölander, Nandini Krishnamurthy, 2004, Pacific Symposium on Biocomputing.

The Generation Challenge Programme comparative plant stress-responsive gene catalogue

Theo van Hintum, Manuel Ruiz, Kimmen Sjölander, 2007, Nucleic Acids Res..

Getting Started in Structural Phylogenomics

Kimmen Sjölander, K. Sjölander, 2010, PLoS Comput. Biol..

Phylogenomic inference of protein molecular function: advances and challenges

Kimmen Sjölander, K. Sjölander, Kimmen Sjölander, 2004, Bioinform..

The PhyloFacts FAT-CAT web server: ortholog identification and function prediction using fast approximate tree classification

Kimmen Sjölander, Cyrus Afrasiabi, Christopher Meacham, 2013, Nucleic Acids Res..

Phylogenomic Inference of Protein Molecular Function

Kimmen Sjölander, Nandini Krishnamurthy, K. Sjölander, 2005, Current protocols in bioinformatics.