Zhirong Sun

发表

Protein sub-cellular localisation prediction by analysis of short-range residue correlations

Jian Guo, Yuanlie Lin, Zhirong Sun, 2006, Int. J. Bioinform. Res. Appl..

Robustness Analysis of the IFN-γ Induced JAK-STAT Signaling Pathway

Zhike Zi, Zhirong Sun, Z. Zi, 2005, Journal of Computer Science and Technology.

PyMut: A Web Tool for Overlapping Gene Loss-of-Function Mutation Design

Zhirong Sun, Ke Liu, Junbiao Dai, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

DBMLoc: a Database of proteins with multiple subcellular localizations

Song Zhang, Yun Zhou, Zhirong Sun, 2008, BMC Bioinformatics.

Inferring protein function by domain context similarities in protein-protein interaction networks

Hu Chen, Ke Liu, Song Zhang, 2009, BMC Bioinformatics.

HMMGEP: clustering gene expression data using hidden Markov models

Xinglai Ji, Yuan Yuan, Yanda Li, 2004, Bioinform..

Exploring phenotype-associated modules in an oral cavity tumor using an integrated framework

Wenting Li, Ke Liu, Yun Zhou, 2009, Bioinform..

Funneled Landscape Leads to Robustness of Cell Networks: Yeast Cell Cycle

Jin Wang, Bo Huang, Zhirong Sun, 2006, PLoS Comput. Biol..

Mining gene expression data using a novel approach based on hidden Markov models

Xinglai Ji, Zhirong Sun, Jesse Li-Ling, 2003, FEBS letters.

Logic motif of combinatorial control in transcriptional networks

Rui Jiang, Zhirong Sun, Xuebing Wu, 2008 .

A Novel Method for Protein Subcellular Localization Based on Boosting and Probabilistic Neural Network

Jian Guo, Yuanlie Lin, Zhirong Sun, 2004, APBC.

Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis

Ke Liu, Zhirong Sun, Yuchao Li, 2013, Bioinform..

SubLoc: a server/client suite for protein subcellular location based on SOAP

Hu Chen, Zhirong Sun, Ni Huang, 2006, Bioinform..

Markov model applied to gene evolution

Xinglai Ji, Zhirong Sun, 2012 .

MICAlign: a sequence-to-structure alignment tool integrating multiple sources of information in conditional random fields

Song Zhang, Zhirong Sun, Yu Su, 2009, Bioinform..

A novel statistical ligand-binding site predictor: application to ATP-binding sites.

Ting Guo, Yanxin Shi, Zhirong Sun, 2005, Protein engineering, design & selection : PEDS.

BSubLoc: database of protein subcellular localization

Xinglai Ji, Zhirong Sun, Tao Guo, 2004, Nucleic Acids Res..

A novel method for protein subcellular localization: Combining residue-couple model and SVM

Jian Guo, Yuanlie Lin, Zhirong Sun, 2005, APBC.

txCoords: A Novel Web Application for Transcriptomic Peak Re-Mapping

Zhirong Sun, Ke Liu, Zhangming Yan, 2017, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A novel method for protein secondary structure prediction using dual‐layer SVM and profiles

Hu Chen, Jian Guo, Yuanlie Lin, 2004, Proteins.

Cancer core modules identification through genomic and transcriptomic changes correlation detection at network level

Wenting Li, Rui Wang, Zhirong Sun, 2012, BMC Systems Biology.

MeMo: a web tool for prediction of protein methylation modifications

Yu Xue, Hu Chen, Zhirong Sun, 2006, Nucleic Acids Res..

Support vector machine approach for protein subcellular localization prediction

Zhirong Sun, Sujun Hua, S. Hua, 2001, Bioinform..

The pattern of common supersecondary structure (motifs) in protein database

Tom L. Blundell, Zhirong Sun, T. Blundell, 1995, Proceedings of the Twenty-Eighth Annual Hawaii International Conference on System Sciences.

NBA-Palm: prediction of palmitoylation site implemented in Naïve Bayes algorithm

Yu Xue, Hu Chen, Zhirong Sun, 2006, BMC Bioinformatics.

CTKPred: an SVM-based method for the prediction and classification of the cytokine superfamily.

Zhirong Sun, Zhirong Sun, Ni Huang, 2005, Protein engineering, design & selection : PEDS.

AthMethPre: a web server for the prediction and query of mRNA m6A sites in Arabidopsis thaliana.

Zhirong Sun, Ke Liu, Shunian Xiang, 2016, Molecular bioSystems.

Investigation into the regulation mechanisms of TRAIL apoptosis pathway by mathematical modeling.

Zhirong Sun, Zhirong Sun, Ting Zhang, 2010, Acta biochimica et biophysica Sinica.

RNAMethPre: A Web Server for the Prediction and Query of mRNA m6A Sites

Ke Liu, Zhirong Sun, Shunian Xiang, 2016, PloS one.

Preferential duplication in the sparse part of yeast protein interaction network.

Li Li, Zhirong Sun, Xuefeng Xia, 2006, Molecular biology and evolution.

Quantitative prediction of protein‐protein binding affinity with a potential of mean force considering volume correction

Zhirong Sun, Xuefeng Xia, Xuefeng Xia, 2010 .

Identifying genes related to drug anticancer mechanisms using support vector machine

Zhirong Sun, Zhirong Sun, Lei Bao, 2002, FEBS letters.

Transposable element fragments in protein-coding regions and their contributions to human functional proteins.

Zhirong Sun, Li Li, Zhirong Sun, 2007, Gene.

Funneled landscape leads to robustness of cellular networks: MAPK signal transduction.

Zhirong Sun, Xuefeng Xia, Xuefeng Xia, 2006, Biophysical journal.

Proteins with Class α/β Fold Have High-level Participation in Fusion Events

Zhirong Sun, Julian Gough, J. Gough, 2002 .

Reverse Engineering of Bacterial Chemotaxis Pathway via Frequency Domain Analysis

Jun Wang, Zhirong Sun, Junjie Luo, 2010, PloS one.

p-SAGE:Parametric Statistical Analysis of Gene Sets

Zhirong Sun, Xuefeng Xia, Zhirong Sun, 2009 .

Quantitative prediction of protein–protein binding affinity with a potential of mean force considering volume correction

Zhirong Sun, Xuefeng Xia, Xuefeng Xia, 2009, Protein science : a publication of the Protein Society.

Structural and functional characterization of the human CCR5 receptor in complex with HIV gp120 envelope glycoprotein and CD4 receptor by molecular modeling studies

Zhirong Sun, Shuqun Liu, Zhirong Sun, 2003, Journal of molecular modeling.

Inferring functional linkages between proteins from evolutionary scenarios.

Zhirong Sun, Xuefeng Xia, Li Li, 2006, Journal of molecular biology.