Paul A. Yushkevich

Paul A. Yushkevich, James C. Gee, Hui Zhang, 2004, Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2004. CVPR 2004..

Structure-specific statistical mapping of white matter tracts

Paul A. Yushkevich, James C. Gee, Hui Zhang, 2007, NeuroImage.

Structure-Specific Statistical Mapping of White Matter Tracts using the Continuous Medial Representation

Paul A. Yushkevich, James C. Gee, Hui Zhang, 2007, ICCV.

Heterogeneity of functional activation during memory encoding across hippocampal subfields in temporal lobe epilepsy

Paul A. Yushkevich, John A. Detre, Marc Korczykowski, 2011, NeuroImage.

Multi-atlas Segmentation with Robust Label Transfer and Label Fusion

Paul A. Yushkevich, Hongzhi Wang, Alison M. Pouch, 2013, IPMI.

Improving Multi-atlas Segmentation by Convolutional Neural Network Based Patch Error Estimation

Paul A. Yushkevich, Jiancong Wang, Long Xie, 2019, MICCAI.

Supervoxel-Based Hierarchical Markov Random Field Framework for Multi-atlas Segmentation

Paul A. Yushkevich, Hongzhi Wang, Ning Yu, 2016, Patch-MI@MICCAI.

Segmentation of the Aortic Valve Apparatus in 3D Echocardiographic Images: Deformable Modeling of a Branching Medial Structure

Paul A. Yushkevich, Hongzhi Wang, Alison M. Pouch, 2014, STACOM.

Cardiac Medial Modeling and Time-Course Heart Wall Thickness Analysis

Alejandro F. Frangi, Brian B. Avants, Paul A. Yushkevich, 2008, MICCAI.

User-Guided Segmentation of Multi-modality Medical Imaging Datasets with ITK-SNAP

Guido Gerig, Yang Gao, Paul A. Yushkevich, 2018, Neuroinformatics.

Shape-based semi-automatic hippocampal subfield segmentation with learning-based bias removal

Michael Weiner, Paul A. Yushkevich, Hongzhi Wang, 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Multi-atlas label fusion with augmented atlases for fast and accurate segmentation of cardiac MR images

Paul A. Yushkevich, Hongzhi Wang, Tanveer F. Syeda-Mahmood, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

Gradient Boosted Trees for Corrective Learning

Paul A. Yushkevich, Russell T. Shinohara, Ipek Oguz, 2017, MLMI@MICCAI.

Systematic comparison of different techniques to measure hippocampal subfield volumes in ADNI2

Michael W. Weiner, Paul A. Yushkevich, Lei Wang, 2017, NeuroImage: Clinical.

Accounting for the Confound of Meninges in Segmenting Entorhinal and Perirhinal Cortices in T1-Weighted MRI

Paul A. Yushkevich, Hongzhi Wang, José V. Manjón, 2016, MICCAI.

Multiple Sclerosis Lesion Segmentation Using Joint Label Fusion

Peter A. Calabresi, Paul A. Yushkevich, Russell T. Shinohara, 2017, Patch-MI@MICCAI.

Spatial bias in multi-atlas based segmentation

Paul A. Yushkevich, Hongzhi Wang, Hongzhi Wang, 2012, 2012 IEEE Conference on Computer Vision and Pattern Recognition.

Multi-atlas segmentation with joint label fusion and corrective learning—an open source implementation

Paul A. Yushkevich, Hongzhi Wang, P. Yushkevich, 2013, Front. Neuroinform..

Regional Structural Characterization of the Brain of Schizophrenia Patients

Paul A. Yushkevich, James C. Gee, Ruben C. Gur, 2004, MICCAI.

Regression-based label fusion for multi-atlas segmentation

Paul A. Yushkevich, Hongzhi Wang, John Pluta, 2011, CVPR 2011.

Statistical Modeling of Shape and Appearance Using the Continuous Medial Representation

Paul A. Yushkevich, James C. Gee, Hui Zhang, 2005, MICCAI.

Guiding Automatic Segmentation with Multiple Manual Segmentations

Paul A. Yushkevich, Hongzhi Wang, 2012, MICCAI.

Multiscale deformable model segmentation and statistical shape analysis using medial descriptions

Paul A. Yushkevich, P. Thomas Fletcher, J. S. Marron, 2002, IEEE Transactions on Medical Imaging.

Segmentation, registration, and measurement of shape variation via image object shape

Paul A. Yushkevich, Edward L. Chaney, Stephen M. Pizer, 1999, IEEE Transactions on Medical Imaging.

Diffeomorphic Medial Modeling

Paul A. Yushkevich, Jiancong Wang, Alison M. Pouch, 2019, IPMI.

Feature Selection for Shape-Based Classification of Biological Objects

Paul A. Yushkevich, John G. Csernansky, Stephen M. Pizer, 2003, IPMI.

Semi-automated Image Segmentation of the Midsystolic Left Ventricular Mitral Valve Complex in Ischemic Mitral Regurgitation

Paul A. Yushkevich, Alison M. Pouch, Joseph H. Gorman, 2018, STACOM@MICCAI.

Fully automatic segmentation of the open mitral leaflets in 3D transesophageal echocardiographic images using multi-atlas label fusion and deformable medial modeling

Paul A. Yushkevich, Chandra M. Sehgal, Alison M. Pouch, 2012, 2012 IEEE International Ultrasonics Symposium.

3D Mouse Brain Reconstruction from Histology Using a Coarse-to-Fine Approach

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2006, WBIR.

TAPAS: A Thresholding Approach for Probability Map Automatic Segmentation in Multiple Sclerosis

Peter A. Calabresi, Paul A. Yushkevich, Russell T. Shinohara, 2019, NeuroImage: Clinical.

Continuous Medial Representation for Anatomical Structures

Paul A. Yushkevich, James C. Gee, Hui Zhang, 2006, IEEE Transactions on Medical Imaging.

Ventricularwall thickness analysis in acute myocardial infarction and hypertrophic cardiomyopathy

Alejandro F. Frangi, Paul A. Yushkevich, Alejandro F Frangi, 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Automatic Clustering and Thickness Measurement of Anatomical Variants of the Human Perirhinal Cortex

Brian B. Avants, Paul A. Yushkevich, Hongzhi Wang, 2014, MICCAI.

Standing on the Shoulders of Giants: Improving Medical Image Segmentation via Bias Correction

Michael Weiner, Brian B. Avants, Paul A. Yushkevich, 2010, MICCAI.

Deformable registration of diffusion tensor MR images with explicit orientation optimization

Paul A. Yushkevich, James C. Gee, Hui Zhang, 2006, Medical Image Anal..

Unbiased White Matter Atlas Construction Using Diffusion Tensor Images

Daniel Rueckert, Paul A. Yushkevich, James C. Gee, 2007, MICCAI.

Towards diffusion profile image registration

Paul A. Yushkevich, James C. Gee, Hui Zhang, 2004, 2004 2nd IEEE International Symposium on Biomedical Imaging: Nano to Macro (IEEE Cat No. 04EX821).

ITK-SNAP: An interactive tool for semi-automatic segmentation of multi-modality biomedical images

Guido Gerig, Yang Gao, Paul A. Yushkevich, 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

Tensor-Based Morphometry of Fibrous Structures with Application to Human Brain White Matter

Daniel Rueckert, Paul A. Yushkevich, James C. Gee, 2009, MICCAI.

Gender Differences in Cerebral Cortical Folding: Multivariate Complexity-Shape Analysis with Insights into Handling Brain-Volume Differences

Suyash P. Awate, Paul A. Yushkevich, Daniel J. Licht, 2009, MICCAI.

Hippocampus-Specific fMRI Group Activation Analysis with Continuous M-Reps

Paul A. Yushkevich, James C. Gee, John A. Detre, 2006, MICCAI.

Efficient Generation of Shape-Based Reference Frames for the Corpus Callosum for DTI-based Connectivity Analysis

Paul A. Yushkevich, James C. Gee, Hui Sun, 2006, 2006 Conference on Computer Vision and Pattern Recognition Workshop (CVPRW'06).

Automatic Segmentation of the Hippocampus in T1-Weighted MRI with Multi-Atlas Label Fusion Using Open Source Software: Evaluation in 1.5 and 3.0T ADNI MRI

Paul A. Yushkevich, Bb Avants, Hongzhi Wang, 2011 .

Characterizing Anatomical Variability and Alzheimer's Disease Related Cortical Thinning in the Medial Temporal Lobe Using Graph-Based Groupwise Registration and Point Set Geodesic Shooting

Paul A. Yushkevich, Long Xie, Sandhitsu R. Das, 2018, ShapeMI@MICCAI.

Deformable Registration of Diffusion Tensor MR Images with Explicit Orientation Optimization

Paul A. Yushkevich, James C. Gee, Hui Zhang, 2005, MICCAI.

Optimal Weights for Multi-atlas Label Fusion

Paul A. Yushkevich, Hongzhi Wang, John Pluta, 2011, IPMI.

Deformable M-Reps for 3D Medical Image Segmentation

Paul A. Yushkevich, P. Thomas Fletcher, Edward L. Chaney, 2003, International Journal of Computer Vision.

In Vivo Image-Based 4D Modeling of Competent and Regurgitant Mitral Valve Dynamics

Paul A. Yushkevich, Alison M. Pouch, Albert T. Cheung, 2020, Experimental Mechanics.

Spatial correspondence based asymmetry analysis in FMRI

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Multi-Atlas Segmentation with Joint Label Fusion

Paul A. Yushkevich, Hongzhi Wang, John Pluta, 2013, IEEE Transactions on Pattern Analysis and Machine Intelligence.

A learning-based wrapper method to correct systematic errors in automatic image segmentation: Consistently improved performance in hippocampus, cortex and brain segmentation

Brian B. Avants, Paul A. Yushkevich, Hongzhi Wang, 2011, NeuroImage.

A tract-specific approach to assessing white matter in preterm infants

Paul A. Yushkevich, Joseph V. Hajnal, Paul Aljabar, 2017, NeuroImage.

Evaluation of Shape-Based Normalization in the Corpus Callosum for White Matter Connectivity Analysis

Paul A. Yushkevich, James C. Gee, Hui Sun, 2007, MICCAI.

Multivariate High-Dimensional Cortical Folding Analysis, Combining Complexity and Shape, in Neonates with Congenital Heart Disease

Suyash P. Awate, Paul A. Yushkevich, Zhuang Song, 2009, IPMI.

Shape-Based Normalization of the Corpus Callosum for DTI Connectivity Analysis

Paul A. Yushkevich, James C. Gee, Hui Sun, 2007, IEEE Transactions on Medical Imaging.

Synthesis, Deformation, and Statistics of 3D Objects via M-Reps

Paul A. Yushkevich, P. Thomas Fletcher, Andrew Thall, 2008, Medial Representations.

Probabilistic Atlas of the Human Hippocampus Combining Ex Vivo MRI and Histology

Paul A. Yushkevich, John Pluta, Stephen Pickup, 2016, MICCAI.

Joint Intensity Fusion Image Synthesis Applied to Multiple Sclerosis Lesion Segmentation

Peter A. Calabresi, Snehashis Roy, Paul A. Yushkevich, 2017, BrainLes@MICCAI.

Progress update from the hippocampal subfields group

Paul A. Yushkevich, Valerie A. Carr, Katrin Amunts, 2019, Alzheimer's & dementia.

3D Mapping of TAU Neurofibrillary Tangle Pathology in the Human Medial Temporal Lobe

M. Dylan Tisdall, Paul A. Yushkevich, Emilio Artacho-Pérula, 2020, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI).

Intuitive, Localized Analysis of Shape Variability

Paul A. Yushkevich, J. S. Marron, Stephen M. Pizer, 2001, IPMI.

3D Cerebral Cortical Morphometry in Autism: Increased Folding in Children and Adolescents in Frontal, Parietal, and Temporal Lobes

Robert T. Schultz, Suyash P. Awate, Paul A. Yushkevich, 2008, MICCAI.

Quantitative comparison of 21 protocols for labeling hippocampal subfields and parahippocampal subregions in in vivo MRI: Towards a harmonized segmentation protocol

M. Mallar Chakravarty, Paul A. Yushkevich, Valerie A. Carr, 2015, NeuroImage.

Automated Segmentation and Geometrical Modeling of the Tricuspid Aortic Valve in 3D Echocardiographic Images

Paul A. Yushkevich, Hongzhi Wang, Chandra M. Sehgal, 2013, MICCAI.

NON-UNIFORM SMOOTHING IN HIPPOCAMPUS-SPECIFIC GROUP FMRI ANALYSIS

Paul A. Yushkevich, James C. Gee, John A. Detre, 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

N4ITK: Improved N3 Bias Correction

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2010, IEEE Transactions on Medical Imaging.

Automated Meshing of Anatomical Shapes for Deformable Medial Modeling: Application to the Placenta in 3D Ultrasound

Paul A. Yushkevich, James C. Gee, Alison M. Pouch, 2020, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI).

Bias in estimation of hippocampal atrophy using deformation-based morphometry arises from asymmetric global normalization: An illustration in ADNI 3 T MRI data

Brian B. Avants, Paul A. Yushkevich, John Pluta, 2010, NeuroImage.

Comparative Methods for Analyzing Diffusion Tensor Imaging in Semantic Variant Primary Progressive Aphasia (P03.098)

Paul A. Yushkevich, James C. Gee, Philip A. Cook, 2012 .

A Computational White Matter Atlas for Aging with Surface-Based Representation of Fasciculi

Daniel Rueckert, Paul A. Yushkevich, James C. Gee, 2010, WBIR.

Hippocampus-specific fMRI group activation analysis using the continuous medial representation

Paul A. Yushkevich, James C. Gee, John A. Detre, 2007, NeuroImage.

Continuous medial representation of brain structures using the biharmonic PDE

Paul A. Yushkevich, Paul Yushkevich, 2009, NeuroImage.

The optimal template effect in hippocampus studies of diseased populations

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2010, NeuroImage.

Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge

D. Louis Collins, Sébastien Ourselin, M. Jorge Cardoso, 2015, NeuroImage.

Dependency prior for multi-atlas label fusion

Paul A. Yushkevich, Hongzhi Wang, 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

Fully automatic segmentation of the mitral leaflets in 3D transesophageal echocardiographic images using multi-atlas joint label fusion and deformable medial modeling

Paul A. Yushkevich, Hongzhi Wang, Chandra M. Sehgal, 2014, Medical Image Anal..

Branching medial models for cardiac shape representation

Alejandro F. Frangi, Brian B. Avants, Paul A. Yushkevich, 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Groupwise Segmentation with Multi-atlas Joint Label Fusion

Paul A. Yushkevich, Hongzhi Wang, 2013, MICCAI.

A Tract-Specific Framework for White Matter Morphometry Combining Macroscopic and Microscopic Tract Features

Suyash P. Awate, Paul A. Yushkevich, James C. Gee, 2009, MICCAI.

Robust Automated Amygdala Segmentation via Multi-Atlas Diffeomorphic Registration

Brian B. Avants, Paul A. Yushkevich, Jamie L. Hanson, 2012, Front. Neurosci..

Nearly automatic segmentation of hippocampal subfields in in vivo focal T2-weighted MRI

Michael Weiner, Brian B. Avants, Paul A. Yushkevich, 2010, NeuroImage.

SYSTEMATIC COMPARISON OF DIFFERENT TECHNIQUES TO MEASURE HIPPOCAMPAL SUBFIELD VOLUMES IN ADNI2

Michael W. Weiner, Paul A. Yushkevich, Lei Wang, 2016, Alzheimer's & Dementia.

High-Dimensional Spatial Normalization of Diffusion Tensor Images Improves the Detection of White Matter Differences: An Example Study Using Amyotrophic Lateral Sclerosis

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2007, IEEE Transactions on Medical Imaging.

Anatomy-Based Visualizations of Diffusion Tensor Images of Brain White Matter

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2006, Visualization and Processing of Tensor Fields.

An Automated Approach to Connectivity-Based Partitioning of Brain Structures

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2005, MICCAI.

Shape-Based Alignment of Hippocampal Subfields: Evaluation in Postmortem MRI

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2008, MICCAI.

Spatiotemporal Segmentation and Modeling of the Mitral Valve in Real-Time 3D Echocardiographic Images

Paul A. Yushkevich, Alison M. Pouch, Albert T. Cheung, 2017, MICCAI.

Deformable Modeling Using a 3D Boundary Representation with Quadratic Constraints on the Branching Structure of the Blum Skeleton

Paul A. Yushkevich, Hui Zhang, Hui Zhang, 2013, IPMI.

Automatic Cardiac MRI Segmentation Using a Biventricular Deformable Medial Model

Alejandro F. Frangi, Paul A. Yushkevich, Hongzhi Wang, 2010, MICCAI.

Combining Deep Learning and Multi-atlas Label Fusion for Automated Placenta Segmentation from 3DUS

Paul A. Yushkevich, James C. Gee, Ipek Oguz, 2018, DATRA/PIPPI@MICCAI.

Reconstruction of the human hippocampus in 3D from histology and high-resolution ex-vivo MRI

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

Surface-based modeling of white matter fasciculi with orientation encoding

Paul A. Yushkevich, James C. Gee, Hui Zhang, 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Measuring longitudinal change in the hippocampal formation from in vivo high-resolution T2-weighted MRI

Michael Weiner, Brian B. Avants, Paul A. Yushkevich, 2012, NeuroImage.

A tract-specific framework for white matter morphometry combining macroscopic and microscopic tract features

Suyash P. Awate, Paul A. Yushkevich, James C. Gee, 2010, Medical Image Anal..

A framework for informing segmentation of in vivo MRI with information derived from ex vivo imaging: Application in the medial temporal lobe

Paul A. Yushkevich, John A. Detre, Mark A. Elliott, 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2009, NeuroImage.

Neuroinformatics for Genome-Wide 3-D Gene Expression Mapping in the Mouse Brain

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2007, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Building an Ex Vivo Atlas of the Earliest Brain Regions Affected by Alzheimer's Disease Pathology

M. Dylan Tisdall, Paul A. Yushkevich, John A. Detre, 2020, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI).

Hippocampus segmentation using a stable maximum likelihood classifier ensemble algorithm

Paul A. Yushkevich, Hongzhi Wang, John Pluta, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2014, NeuroImage.

From label fusion to correspondence fusion: A new approach to unbiased groupwise registration

Brian B. Avants, Paul A. Yushkevich, Hongzhi Wang, 2012, 2012 IEEE Conference on Computer Vision and Pattern Recognition.

Continuous medial representations for geometric object modeling in 2D and 3D

Paul A. Yushkevich, P. Thomas Fletcher, Stephen M. Pizer, 2003, Image Vis. Comput..

FAST AUTOMATIC SEGMENTATION OF HIPPOCAMPAL SUBFIELDS AND MEDIAL TEMPORAL LOBE SUBREGIONS IN 3 TESLA AND 7 TESLA T2-WEIGHTED MRI

Paul A. Yushkevich, John Pluta, Laura E. M. Wisse, 2016, Alzheimer's & Dementia.

Deep Label Fusion: A 3D End-to-End Hybrid Multi-Atlas Segmentation and Deep Learning Pipeline

Paul A. Yushkevich, David A. Wolk, Sadhana Ravikumar, 2021, IPMI.

Accurate and Robust Alignment of Differently Stained Histologic Images Based on Greedy Diffeomorphic Registration

Paul A. Yushkevich, Spyridon Bakas, Ludovic Venet, 2021, Applied sciences.

Deformable Image Registration using Neural ODEs pdf

M. Ani Hsieh, Paul A. Yushkevich, James C. Gee, 2021, ArXiv.

Gray Matter Segmentation in Ultra High Resolution 7 Tesla ex vivo T2w MRI of Human Brain Hemispheres pdf

M. Dylan Tisdall, Paul A. Yushkevich, Murray Grossman, 2021, ArXiv.

Unfolding the Medial Temporal Lobe Cortex to Characterize Neurodegeneration Due to Alzheimer's Disease Pathology Using Ex vivo Imaging

M. Dylan Tisdall, Paul A. Yushkevich, John A. Detre, 2021, MLCN@MICCAI.

Medial temporal lobe subregional morphometry using high resolution MRI in Alzheimer's disease

Michael W. Weiner, Paul A. Yushkevich, David A. Wolk, 2017, Neurobiology of Aging.

Automated placenta segmentation from 3 D ultrasound images

Paul A. Yushkevich, Ipek Oguz, Alison M. Pouch, 2016 .

In vivo measures of tau burden are associated with atrophy in early Braak stage medial temporal lobe regions in amyloid-negative individuals

Paul A. Yushkevich, David A. Wolk, Long Xie, 2019, Alzheimer's & Dementia.

Maturation Along White Matter Tracts in Human Brain Using a Diffusion Tensor Surface Model Tract-Specific Analysis

Paul A. Yushkevich, Hui Zhang, Christian Beaulieu, 2016, Front. Neuroanat..

Relationship of Contextual Cueing and Hippocampal Volume in Amnestic Mild Cognitive Impairment Patients and Cognitively Normal Older Adults

Paul A. Yushkevich, James H. Howard, David A. Wolk, 2015, Journal of the International Neuropsychological Society.

DTI Tractography for Neurosurgical Planning : A Grand Challenge Sunday September 18 , 2011 MICCAI 2011 , Toronto , Canada

Paul A. Yushkevich, James C. Gee, Caroline C. Brun, 2011 .

Anterior and posterior MTL networks in aging and MCI

Paul A. Yushkevich, John Pluta, Lauren Mancuso, 2015, Neurobiology of Aging.

A brain stress test: Cerebral perfusion during memory encoding in mild cognitive impairment

Paul A. Yushkevich, John A. Detre, Hengyi Rao, 2016, NeuroImage: Clinical.

A High-Resolution Computational Atlas of the Human Hippocampus from Postmortem Magnetic Resonance Imaging at 9 . 4 Tesla

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2008 .

Towards Automatic, Model-Driven Determination of 3D Patient Setup Errorsormal Radiotherapy

Paul A. Yushkevich, Edward L. Chaney, Stephen M. Pizer, 1999 .