Zhili He

发表

Noise Robust Method for Analytically Solvable Chaotic Signal Reconstruction

Yi Li, Lidong Liu, Chen Guo, 2019, Circuits Syst. Signal Process..

Numerical modeling of rock dielectric behaviors using micro computerized tomography image

Zhao Jin, Richard C. Liu, Chen Guo, 2014, 2014 IEEE Geoscience and Remote Sensing Symposium.

NCycDB: a curated integrative database for fast and accurate metagenomic profiling of nitrogen cycling genes

Lei Cheng, Lu Lin, Ye Deng, 2018, Bioinform..

Molecular ecological network analyses

Feng Luo, Ye Deng, Yunfeng Yang, 2012, BMC Bioinformatics.

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

Ye Deng, Zhili He, Janet K Jansson, 2011, The ISME Journal.

Biogeographic patterns of soil diazotrophic communities across six forests in the North America

Ye Deng, James H Brown, Michael Kaspari, 2016, Molecular ecology.

GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes

Baohua Gu, Zhili He, Terry J Gentry, 2007, The ISME Journal.

Cas9-Based Tools for Targeted Genome Editing and Transcriptional Control

Zhili He, Tao Xu, Jizhong Zhou, 2014, Applied and Environmental Microbiology.

Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state

Jay D Keasling, Aindrila Mukhopadhyay, Adam P Arkin, 2012, BMC Genomics.

Construction and evaluation of a Clostridium thermocellum ATCC 27405 whole-genome oligonucleotide microarray

Jonathan R Mielenz, Zhili He, Babu Raman, 2007, Applied biochemistry and biotechnology.

Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem

Eric R. Johnston, Yiqi Luo, Zhili He, 2016, Front. Microbiol..

The Diversity and Co-occurrence Patterns of N2-Fixing Communities in a CO2-Enriched Grassland Ecosystem

Kai Xue, Qichao Tu, Zhili He, 2016, Microbial Ecology.

Functional Gene Differences in Soil Microbial Communities from Conventional, Low-Input, and Organic Farmlands

Kai Xue, Ye Deng, Zhili He, 2012, Applied and Environmental Microbiology.

Dynamics of Microbial Community Composition and Function during In Situ Bioremediation of a Uranium-Contaminated Aquifer

Ye Deng, Terry C. Hazen, Baohua Gu, 2011, Applied and Environmental Microbiology.

Characterization of the Central Metabolic Pathways in Thermoanaerobacter sp. Strain X514 via Isotopomer-Assisted Metabolite Analysis

Bing Wu, Xueyang Feng, Yinjie J. Tang, 2009, Applied and Environmental Microbiology.

Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris

Adam P. Arkin, Katherine H. Huang, Eric J. Alm, 2010 .

Sequencing of Multiple Clostridial Genomes Related to Biomass Conversion and Biofuel Production

Bernard Henrissat, Miriam L. Land, Adam P. Arkin, 2010, Journal of bacteriology.

Functional gene array-based analysis of microbial community structure in groundwaters with a gradient of contaminant levels.

Zhili He, Liyou Wu, Terry C Hazen, 2009, Environmental science & technology.

Responses of Bacterial Communities to Simulated Climate Changes in Alpine Meadow Soil of the Qinghai-Tibet Plateau

Yunfeng Yang, Zhili He, Shiping Wang, 2015, Applied and Environmental Microbiology.

Development of functional gene microarrays for microbial community analysis.

Ye Deng, Zhili He, Jizhong Zhou, 2012, Current opinion in biotechnology.

Mechanisms of enhanced cellulosic bioethanol fermentation by co-cultivation of Clostridium and Thermoanaerobacter spp.

Helong Jiang, Christopher L. Hemme, Zhili He, 2011, Bioresource technology.

Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community

Ye Deng, Kerrie Barry, Christopher L. Hemme, 2010, The ISME Journal.

Global diversity and biogeography of bacterial communities in wastewater treatment plants

Yong Li, Jurg Keller, Linwei Wu, 2019, Nature Microbiology.

Energetic Consequences of Nitrite Stress in Desulfovibrio vulgaris Hildenborough, Inferred from Global Transcriptional Analysis

Adam P. Arkin, Katherine H. Huang, Eric J. Alm, 2006, Applied and Environmental Microbiology.

Improvement of Oligonucleotide Probe Design Criteria for Functional Gene Microarrays in Environmental Applications

Sung-Keun Rhee, Christopher W. Schadt, Zhili He, 2006, Applied and Environmental Microbiology.

GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer.

Ye Deng, James M Tiedje, Baohua Gu, 2009, Environmental microbiology.

GeoChip 4: a functional gene‐array‐based high‐throughput environmental technology for microbial community analysis

Hao Yu, Kai Xue, Aijie Wang, 2014, Molecular ecology resources.

Geochip-based functional gene analysis of anodophilic communities in microbial electrolysis cells under different operational modes.

Aijie Wang, Ye Deng, Bruce E Logan, 2010, Environmental science & technology.

Responses of microbial communities to single-walled carbon nanotubes in phenol wastewater treatment systems.

Jiti Zhou, Jie Deng, Xuwang Zhang, 2015, Environmental science & technology.

Dynamics of Microbial Community Composition and Function during In Situ Bioremediation of a Uranium-Contaminated Aquifer

Ye Deng, Terry C. Hazen, Baohua Gu, 2011, Applied and Environmental Microbiology.

Strain/species identification in metagenomes using genome-specific markers

Qichao Tu, Zhili He, Jizhong Zhou, 2014, Nucleic acids research.

Salt Stress in Desulfovibrio vulgaris Hildenborough : an Integrated Genomics Approach

Adam P. Arkin, Katherine H. Huang, Eric J. Alm, 2006 .

Natural Bacterial Communities Serve as Quantitative Geochemical Biosensors

Ping Zhang, Eric J Alm, Paul D Adams, 2015, mBio.

Temperature mediates continental-scale diversity of microbes in forest soils

Kai Xue, Ye Deng, Robert Waide, 2016, Nature Communications.

Predicting taxonomic and functional structure of microbial communities in acid mine drainage

Jun Liu, Pu Jia, Zhili He, 2016, The ISME Journal.

The Shewanella Federation: Functional Genomic Investigations of Dissimilatory Metal-Reducing Shewanella

Zhili He, Jizhong Zhou, 2009 .

Functional Molecular Ecological Networks

Ye Deng, Qichao Tu, Feng Luo, 2010, mBio.

Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming

James R. Cole, Kai Xue, Ye Deng, 2016 .

Development and applications of functional gene microarrays in the analysis of the functional diversity, composition, and structure of microbial communities

Ye Deng, Zhili He, Jizhong Zhou, 2011 .

Metagenomic reconstruction of nitrogen cycling pathways in a CO2-enriched grassland ecosystem

Kai Xue, Gary Xie, Peter B. Reich, 2017 .

Stochastic Assembly Leads to Alternative Communities with Distinct Functions in a Bioreactor Microbial Community

Kai Xue, Aijie Wang, Ye Deng, 2013, mBio.

Response of Desulfovibrio vulgaris to Alkaline Stress

Adam P. Arkin, Katherine H. Huang, Qiang He, 2007, Journal of bacteriology.

Microarray-based analysis of microbial functional diversity along an oil contamination gradient in oil field.

Ye Deng, Yuting Liang, Guanghe Li, 2009, FEMS microbiology ecology.

Loss of microbial diversity in soils is coincident with reductions in some specialized functions.

Christopher Quince, Zhili He, Jizhong Zhou, 2014, Environmental microbiology.

Empirical Evaluation of a New Method for Calculating Signal-to-Noise Ratio for Microarray Data Analysis

Zhili He, Jizhong Zhou, Jizhong Zhou, 2008, Applied and Environmental Microbiology.